Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies

  • Hugo López-Fernández
  • Daniel Glez-Peña
  • Miguel Reboiro-Jato
  • Gonzalo Gómez-López
  • David G. Pisano
  • Florentino Fdez-Riverola
Part of the Advances in Intelligent and Soft Computing book series (AINSC, volume 154)

Abstract

AIBench is a Java application framework for building translational software in Biomedicine. In this paper, we show how to use this framework to develop rich user interfaces in next-generation sequencing (NGS) experiments. In particular, we present PileLineGUI, a desktop environment for handling genome position files in next-generation studies based on the PileLine command-line toolbox.

Keywords

next-generation sequencing pileup vcf single nucleotide variants PileLine AIBench framework 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • Hugo López-Fernández
    • 1
  • Daniel Glez-Peña
    • 1
  • Miguel Reboiro-Jato
    • 1
  • Gonzalo Gómez-López
    • 2
  • David G. Pisano
    • 2
  • Florentino Fdez-Riverola
    • 1
  1. 1.ESEI: Escuela Superior de Ingeniería InformáticaUniversity of VigoOurenseSpain
  2. 2.Bioinformatics Unit (UBio), Biología Estructural y BiocomputaciónCentro Nacional de Investigaciones Oncológicas (CNIO)MadridSpain

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