Skip to main content

Analysis of Selected Evolutionary Algorithms in Feature Selection and Parameter Optimization for Data Based Tumor Marker Modeling

  • Conference paper
Book cover Computer Aided Systems Theory – EUROCAST 2011 (EUROCAST 2011)

Abstract

In this paper we report on the use of evolutionary algorithms for optimizing the identification of classification models for selected tumor markers. Our goal is to identify mathematical models that can be used for classifying tumor marker values as normal or as elevated; evolutionary algorithms are used for optimizing the parameters for learning classification models. The sets of variables used as well as the parameter settings for concrete modeling methods are optimized using evolution strategies and genetic algorithms. The performance of these algorithms is analyzed as well as the population diversity progress. In the empirical part of this paper we document modeling results achieved for tumor markers CA 125 and CYFRA using a medical data base provided by the Central Laboratory of the General Hospital Linz; empirical tests are executed using HeuristicLab.

The work described in this paper was done within the Josef Ressel Centre for Heuristic Optimization Heureka! (http://heureka.heuristiclab.com/) sponsored by the Austrian Research Promotion Agency (FFG).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Koepke, J.A.: Molecular marker test standardization. Cancer 69, 1578–1581 (1992)

    Article  Google Scholar 

  2. Bitterlich, N., Schneider, J.: Cut-off-independent tumour marker evaluation using ROC approximation. Anticancer Research 27, 4305–4310 (2007)

    Google Scholar 

  3. Alba, E., Jourdan, J.G.N.L., Talbi, E.G.: Gene selection in cancer classification using PSO/SVM and GA/SVM hybrid algorithms. IEEE Congress on Evolutionary Computation, 284–290 (2007)

    Google Scholar 

  4. Winkler, S., Affenzeller, M., Kronberger, G., Kommenda, M., Wagner, S., Jacak, W., Stekel, H.: Feature selection in the analysis of tumor marker data using evolutionary algorithms. In: Proceedings of the 7th International Mediterranean and Latin American Modelling Multiconference, pp. 1–6 (2010)

    Google Scholar 

  5. Affenzeller, M., Winkler, S., Wagner, S., Beham, A.: Genetic Algorithms and Genetic Programming - Modern Concepts and Practical Applications. Chapman & Hall / CRC (2009)

    Google Scholar 

  6. Yin, B.W., Dnistrian, A., Lloyd, K.O.: Ovarian cancer antigen CA125 is encoded by the MUC16 mucin gene. International Journal of Cancer 98, 737–740 (2002)

    Article  Google Scholar 

  7. Osman, N., O’Leary, N., Mulcahy, E., Barrett, N., Wallis, F., Hickey, K., Gupta, R.: Correlation of serum ca125 with stage, grade and survival of patients with epithelial ovarian cancer at a single centre. Irish Medical Journal 101, 245–247 (2008)

    Google Scholar 

  8. Lai, R.S., Chen, C.C., Lee, P.C., Lu, J.Y.: Evaluation of cytokeratin 19 fragment (cyfra 21-1) as a tumor marker in malignant pleural effusion. Japanese Journal of Clinical Oncology 29(199), 421–424

    Google Scholar 

  9. Winkler, S., Affenzeller, M., Jacak, W., Stekel, H.: Classification of tumor marker values using heuristic data mining methods. In: Proceedings of the GECCO 2010 Workshop on Medical Applications of Genetic and Evolutionary Computation, MedGEC 2010 (2010)

    Google Scholar 

  10. Wagner, S.: Heuristic Optimization Software Systems – Modeling of Heuristic Optimization Algorithms in the HeuristicLab Software Environment. PhD thesis, Johannes Kepler University Linz (2009)

    Google Scholar 

  11. Ljung, L.: System Identification – Theory For the User, 2nd edn. PTR Prentice Hall, Upper Saddle River (1999)

    MATH  Google Scholar 

  12. Duda, R.O., Hart, P.E., Stork, D.G.: Pattern Classification, 2nd edn. Wiley Interscience, Hoboken (2000)

    MATH  Google Scholar 

  13. Nelles, O.: Nonlinear System Identification. Springer, Heidelberg (2001)

    Book  MATH  Google Scholar 

  14. Vapnik, V.: Statistical Learning Theory. Wiley, New York (1998)

    MATH  Google Scholar 

  15. Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines (2001), Software, http://www.csie.ntu.edu.tw/~cjlin/libsvm

  16. Schwefel, H.P.: Numerische Optimierung von Computer-Modellen mittels der Evolutionsstrategie. Birkhäuser Verlag, Basel (1994)

    MATH  Google Scholar 

  17. Holland, J.H.: Adaption in Natural and Artifical Systems. University of Michigan Press, Ann Arbor (1975)

    Google Scholar 

  18. Kohavi, R.: A study of cross-validation and bootstrap for accuracy estimation and model selection. In: Proceedings of the 14th International Joint Conference on Artificial Intelligence, vol. 2, pp. 1137–1143. Morgan Kaufmann, San Francisco (1995)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Winkler, S.M. et al. (2012). Analysis of Selected Evolutionary Algorithms in Feature Selection and Parameter Optimization for Data Based Tumor Marker Modeling. In: Moreno-Díaz, R., Pichler, F., Quesada-Arencibia, A. (eds) Computer Aided Systems Theory – EUROCAST 2011. EUROCAST 2011. Lecture Notes in Computer Science, vol 6927. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-27549-4_43

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-27549-4_43

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-27548-7

  • Online ISBN: 978-3-642-27549-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics