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Tractability Results for the Consecutive-Ones Property with Multiplicity

  • Cedric Chauve
  • Ján Maňuch
  • Murray Patterson
  • Roland Wittler
Part of the Lecture Notes in Computer Science book series (LNCS, volume 6661)

Abstract

A binary matrix has the Consecutive-Ones Property (C1P) if its columns can be ordered in such a way that all 1’s in each row are consecutive. We consider here a variant of the C1P where columns can appear multiple times in the ordering. Although the general problem of deciding the C1P with multiplicity is NP-complete, we present here a case of interest in comparative genomics that is tractable.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2011

Authors and Affiliations

  • Cedric Chauve
    • 1
  • Ján Maňuch
    • 1
    • 2
  • Murray Patterson
    • 2
  • Roland Wittler
    • 1
    • 3
  1. 1.Department of MathematicsSimon Fraser UniversityBurnabyCanada
  2. 2.Department of Computer ScienceUBCVancouverCanada
  3. 3.Technische FakultätUniversität BielefeldBielefeldGermany

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