An Algorithm to Find All Identical Motifs in Multiple Biological Sequences
- Cite this paper as:
- Bindal A.K., Sabarinathan R., Sridhar J., Sherlin D., Sekar K. (2010) An Algorithm to Find All Identical Motifs in Multiple Biological Sequences. In: Dijkstra T.M.H., Tsivtsivadze E., Marchiori E., Heskes T. (eds) Pattern Recognition in Bioinformatics. PRIB 2010. Lecture Notes in Computer Science, vol 6282. Springer, Berlin, Heidelberg
Sequence motifs are of greater biological importance in nucleotide and protein sequences. The conserved occurrence of identical motifs represents the functional significance and helps to classify the biological sequences. In this paper, a new algorithm is proposed to find all identical motifs in multiple nucleotide or protein sequences. The proposed algorithm uses the concept of dynamic programming. The application of this algorithm includes the identification of (a) conserved identical sequence motifs and (b) identical or direct repeat sequence motifs across multiple biological sequences (nucleotide or protein sequences). Further, the proposed algorithm facilitates the analysis of comparative internal sequence repeats for the evolutionary studies which helps to derive the phylogenetic relationships from the distribution of repeats.
KeywordsSequence motifs nucleotide and protein sequences identical motifs dynamic programming direct repeat and phylogenetic relationships
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