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Abstract

We use Latent Semantic Analysis as a basis to study the languages of life. Using this approach we derive techniques to discover latent relationships between organisms such as significant motifs and evolutionary features. Doubly Singular Value Decomposition is defined and the significance of this adaptation is demonstrated by finding a phylogeny of twenty prokaryotes. Minimal Killer Words are used to define families of organisms from negative information. The application of these words makes it possible to automatically retrieve the coding frame of a sequence from any organism.

Keywords

Languages of Life Motifs Phylogeny Minimal Killer Words Doubly Singular Value Decomposition Latent Semantic Analysis Cross Language Information Retrieval Knowledge Discovery Data Mining 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Ryan Anthony Rossi
    • 1
  1. 1.Jet Propulsion LaboratoryCalifornia Institute of TechnologyPasadenaU.S.A.

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