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CSL Model Checking of Biochemical Networks with Interval Decision Diagrams

  • Martin Schwarick
  • Monika Heiner
Part of the Lecture Notes in Computer Science book series (LNCS, volume 5688)

Abstract

This paper presents an Interval Decision Diagram based approach to symbolic CSL model checking of Continuous Time Markov Chains which are derived from stochastic Petri nets. Matrix-vector and vector-matrix multiplication are the major tasks of exact analysis. We introduce a simple, but powerful algorithm which uses explicitly the Petri net structure and allows for parallelisation. We present results demonstrating the efficiency of our first prototype implementation when applied to biochemical network models, specifically with increasing token numbers. Our tool currently supports CSL model checking of time-bounded operators and the Next operator for ordinary stochastic Petri nets.

Keywords

Model Check Rate Matrix Cache Data Continuous Time Markov Chain Biochemical Network 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Martin Schwarick
    • 1
  • Monika Heiner
    • 1
  1. 1.Department of Computer ScienceBrandenburg University of TechnologyCottbusGermany

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