Modeling of Genetic Regulatory Network in Stochastic π-Calculus

  • Mylène Maurin
  • Morgan Magnin
  • Olivier Roux
Conference paper

DOI: 10.1007/978-3-642-00727-9_27

Part of the Lecture Notes in Computer Science book series (LNCS, volume 5462)
Cite this paper as:
Maurin M., Magnin M., Roux O. (2009) Modeling of Genetic Regulatory Network in Stochastic π-Calculus. In: Rajasekaran S. (eds) Bioinformatics and Computational Biology. Lecture Notes in Computer Science, vol 5462. Springer, Berlin, Heidelberg

Abstract

In this paper, we address the problem of modeling biological regulatory networks thanks to the stochastic π-calculus. We propose a method which extends a logical method, that is the approach of René Thomas. By introducing temporal and stochastic aspects there, we make our formalism closer to biological reality. We then use the SPiM stochastic simulator to illustrate the practical interests of this description. The application example concerns the behaviors of four interacting genes involved in the λ-phage. Interesting results are emerging from the simulations. First, it confirms knowledge of the regulation phenomena. In addition, experiments with different values of the delay parameters give some precious hints of a tendency either for the lytic phase or to the lysogenic phase.

Keywords

Genetic regulatory network Stochastic π-calculus System biology 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Mylène Maurin
    • 1
  • Morgan Magnin
    • 1
  • Olivier Roux
    • 1
  1. 1.IRCCyN, CNRS UMR 6597Nantes Cedex 3France

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