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Genome Halving under DCJ Revisited

  • Julia Mixtacki
Part of the Lecture Notes in Computer Science book series (LNCS, volume 5092)

Abstract

The Genome Halving Problem is the following: Given a rearranged duplicated genome, find a perfectly duplicated genome such that the rearrangement distance between these genomes is minimal with respect to a particular model of genome rearrangement. Recently, Warren and Sankoff studied this problem under the general DCJ model where the pre-duplicated genome contains both, linear and circular chromosomes. In this paper, we revisit the Genome Halving Problem for the DCJ distance and we propose a genome model such that constraints for linear genomes, as well as the ones for circular genomes are taken into account. Moreover, we correct an error in the original paper.

Keywords

Genome Duplication Ancestral Genome Circular Chromosome Linear Chromosome Genome Model 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2008

Authors and Affiliations

  • Julia Mixtacki
    • 1
  1. 1.International NRW Graduate School in Bioinformatics and Genome ResearchUniversität BielefeldGermany

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