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A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals

  • Tzvika Hartman
  • Roded Sharan
Part of the Lecture Notes in Computer Science book series (LNCS, volume 3240)

Abstract

One of the most promising ways to determine evolutionary distance between two organisms is to compare the order of appearance of orthologous genes in their genomes. The resulting genome rearrangement problem calls for finding a shortest sequence of rearrangement operations that sorts one genome into the other. In this paper we provide a 1.5-approximation algorithm for the problem of sorting by transpositions and transreversals, improving on a five years old 1.75 ratio for this problem. Our algorithm is also faster than current approaches and requires \(O(n^{3/2} \sqrt{\log{n}})\) time for n genes.

Keywords

14th Annual Symposium Signed Permutation Black Edge Breakpoint Graph Canonical Labelling 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2004

Authors and Affiliations

  • Tzvika Hartman
    • 1
  • Roded Sharan
    • 2
  1. 1.Dept. of Computer Science and Applied MathematicsWeizmann Institute of ScienceRehovotIsrael
  2. 2.International Computer Science InstituteBerkeleyUSA

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