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Adaptive Grid Scheduling of a High-Throughput Bioinformatics Application

  • Eduardo Huedo
  • Rubén S. Montero
  • Ignacio M. Llorente
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 3019)

Abstract

Grids provide a way to access the resources needed to execute the compute and data intensive applications required in the Bioinformatics field. However, in spite of the great research effort made in the last years, application development and execution in the Grid continue requiring a high level of expertise due to its heterogeneous and dynamic nature. In this paper, we show the procedure to adapt an existing Bioinformatics application to the Grid using the GridWay tool. The GridWay allows the efficient resolution of large computational experiments by reacting automatically to Grid- and application-generated dynamic events.

Keywords

Protein Data Bank Fault Tolerance Grid Resource Globus Toolkit Bioinformatics Application 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2004

Authors and Affiliations

  • Eduardo Huedo
    • 1
  • Rubén S. Montero
    • 2
  • Ignacio M. Llorente
    • 1
    • 2
  1. 1.Laboratorio de Computación Avanzada, Simulación y Aplicaciones TelemáticasCentro de Astrobiología (CSIC-INTA)Torrejón de ArdozSpain
  2. 2.Departamento de Arquitectura de Computadores y AutomáticaUniversidad ComplutenseMadridSpain

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