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Incremental Wrapper Based Random Forest Gene Subset Selection for Tumor Discernment

  • Alia Fatima
  • Usman Qamar
  • Saad Rehman
  • Aiman Khan Nazir
Conference paper
Part of the Communications in Computer and Information Science book series (CCIS, volume 903)

Abstract

High-dimensional cancer related dataset permits the researchers to timely diagnose and facilitate in effective treatment of the cancer. Biomedicine application process on the thousands of features. It is challenging to extract the precise statistics from this high-dimensional dataset. This paper presents the Incremental Wrapper based Random Forest Gene Subset Selection of Tumor discernment that mechanisms on the principle of incremental wrapper based feature subset selection with random forest classification algorithm and this algorithm also works as performance validator. Incremental wrapper based feature subset selection is a technique to pick out a finest conceivable subset of genes from the high-dimensional data with low computational cost. Random Forest will increase the overall performance as it works better in cancer related high-dimensional dataset. The efficacy of the random forest classification algorithm as performance validator will significantly improve by working on a selective discriminative subset of prognostic genes as compare to the raw data. We evaluate the proposed methodology on the six publicly available cancer related high dimensional datasets and found that the proposed methodology outperform as compare to standard random forests.

Keywords

Cancer classification Random forest IWSS Incremental wrapper based gene subset selection 

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Copyright information

© Springer Nature Switzerland AG 2018

Authors and Affiliations

  • Alia Fatima
    • 1
  • Usman Qamar
    • 1
  • Saad Rehman
    • 1
  • Aiman Khan Nazir
    • 1
  1. 1.National University of Sciences and Technology (NUST)IslamabadPakistan

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