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Scattering in Zebrafish Brain for Optogenetics

  • Itia Amandine Favre-Bulle
Chapter
Part of the Springer Theses book series (Springer Theses)

Abstract

In the previous chapter, I focussed on the theory and modelling of light scattering in brain tissue. In this chapter, I present the measurements of backscattered light in-vivo in the zebrafish brain and compare those with my Monte Carlo method and model.

References

  1. 1.
    I.A. Favre-Bulle, D. Preece, T.A. Nieminen, L.A. Heap, E.K. Scott, H. Rubinsztein-Dunlop, Scattering of sculpted light in intact brain tissue, with implications for optogenetics. Sci. Rep. 5, 11501 (2015)ADSCrossRefGoogle Scholar
  2. 2.
    A.M. Packer, B. Roska, M. Hausser, Targeting neurons and photons for optogenetics. Nat. Neurosci. 16(7), 805 (2013)CrossRefGoogle Scholar
  3. 3.
    E. Papagiakoumou, F. Anselmi, A. Begue, V. de Sars, J. Gluckstad, E.Y. Isacoff, V. Emiliani, Scanless two-photon excitation of channelrhodopsin-2. Nat. Meth. 7(10), 848 (2010)CrossRefGoogle Scholar
  4. 4.
    W. Graeme, C. Johannes, Experimental demonstration of holographic three-dimensional light shaping using a gerchberg-saxton algorithm. New J. Phys. 7(1), 117 (2005)Google Scholar
  5. 5.
    S. Yang, E. Papagiakoumou, M. Guillon, V. de Sars, C.M. Tang, V. Emiliani, Three-dimensional holographic photostimulation of the dendritic arbor. J. Neural Eng. 8(4), 046002 (2011)ADSCrossRefGoogle Scholar
  6. 6.
    V.R. Daria, C. Stricker, R. Bowman, S. Redman, H.-A. Bachor, Arbitrary multisite two-photon excitation in four dimensions. Appl. Phys. Lett. 95(9), 093701 (2009)ADSCrossRefGoogle Scholar
  7. 7.
    D. Engstrom, M. Persson, J. Bengtsson, M. Goksor, Calibration of spatial light modulators suffering from spatially varying phase response. Opt. Express 21(13), 16086 (2013)ADSCrossRefGoogle Scholar
  8. 8.
    R. Bowman, V. D’Ambrosio, E. Rubino, O. Jedrkiewicz, P. Di Trapani, M.J. Padgett, Optimisation of a low cost slm for diffraction efficiency and ghost order suppression. Eur. Phys. J. Spec. Top. 199(1), 149 (2011)CrossRefGoogle Scholar
  9. 9.
    E. Ronzitti, M. Guillon, V. de Sars, V. Emiliani, Lcos nematic slm characterization and modeling for diffraction efficiency optimization, zero and ghost orders suppression. Opt. Express 20(16) (2012)Google Scholar
  10. 10.
    M. Agour, E. Kolenovic, C. Falldorf, C. von Kopylow, Suppression of higher diffraction orders and intensity improvement of optically reconstructed holograms from a spatial light modulator 11, 105405 (2009)Google Scholar
  11. 11.
    A.M. Packer, L.E. Russell, H.W.P. Dalgleish, M. Hausser, Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo. Nat. Meth. 12(2), 140 (2015)CrossRefGoogle Scholar
  12. 12.
    W. Yang, J.E. Miller, L. Carrillo-Reid, E. Pnevmatikakis, L. Paninski, R. Yuste, D.S. Peterka, Simultaneous multi-plane imaging of neural circuits. Neuron 89(2), 269 (2016)CrossRefGoogle Scholar
  13. 13.
    S. Quirin, J. Jackson, D.S. Peterka, R. Yuste, Simultaneous imaging of neural activity in three dimensions. Front. Neural Circuits 8, 29 (2014)CrossRefGoogle Scholar

Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  1. 1.School of Mathematics and PhysicsThe University of QueenslandBrisbaneAustralia

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