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Computer Modelling of the Lipid Matrix of Biomembranes

  • Marta Pasenkiewicz-GierulaEmail author
  • Michał Markiewicz
Chapter
Part of the Springer Series on Bio- and Neurosystems book series (SSBN, volume 8)

Abstract

The best recognised functions of biomembranes are to separate and protect the cell or the organelle from the environment and to enable communication and transport between their interior and exterior. The main structural element of any biomembrane is its lipid matrix, which, in most cases, is a lipid bilayer. Lipid matrix is a supramolecular dynamic structure where molecules undergo a broad range of motions. Such structures are difficult to study experimentally; in contrast, classical molecular modelling methods are well suited for this purpose. In this chapter we present computational approaches based on classical molecular modelling with atomic resolution to study lipid bilayers and their limitations, the studied bilayer models and the results obtained using these methods. The necessity of model validation is stressed.

Notes

Acknowledgements

MPG is grateful to Akihiro Kusumi and W. K. Subczynski for numerous discussions. The Polish National Science Centre is acknowledged for the financial support (grants no. N301 472638; N301 02131/0553; 2011/01/B/NZ1/00081; 2016/22/M/NZ1/0187). Faculty of Biochemistry, Biophysics and Biotechnology of Jagiellonian University is a partner of the Leading National Research Centre (KNOW) supported by the Ministry of Science and Higher Education.

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© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Marta Pasenkiewicz-Gierula
    • 1
    Email author
  • Michał Markiewicz
    • 1
  1. 1.Department of Computational Biophysics and Bioinformatics, Faculty of Biochemistry, Biophysics, and BiotechnologyJagiellonian UniversityKrakowPoland

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