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Solving the Tree Containment Problem for Reticulation-Visible Networks in Linear Time

  • Andreas D. M. GunawanEmail author
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 10849)

Abstract

The tree containment problem (TCP) is a fundamental problem in phylogenetic study. It was introduced as a mean for verifying whether a network is consistent with a binary tree. The containment problem is NP-complete, even if the network input is binary. If the input is restricted to reticulation-visible networks, the TCP has been proved to be solvable in quadratic time. In this paper, we show that there is a linear time TCP algorithm for binary reticulation-visible networks.

Keywords

Phylogeny reconstruction Tree containment problem Reticulation-visible 

Notes

Acknowledgement

I’d like to thank Prof. Zhang Louxin for his guidance and help. The project is financially supported by Singapore MoE-ARF Tier 1 grant, R-146-000-238-114.

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Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of MathematicsNational University of SingaporeSingaporeSingapore

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