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Visualizing Co-phylogenetic Reconciliations

  • Tiziana Calamoneri
  • Valentino Di Donato
  • Diego Mariottini
  • Maurizio Patrignani
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 10692)

Abstract

We introduce a hybrid metaphor for the visualization of the reconciliations of co-phylogenetic trees, that are mappings among the nodes of two trees. The typical application is the visualization of the co-evolution of hosts and parasites in biology. Our strategy combines a space-filling and a node-link approach. Differently from traditional methods, it guarantees an unambiguous and ‘downward’ representation whenever the reconciliation is time-consistent (i.e., meaningful). We address the problem of the minimization of the number of crossings in the representation, by giving a characterization of planar instances and by establishing the complexity of the problem. Finally, we propose heuristics for computing representations with few crossings.

Notes

Acknowledgments

We thank Riccardo Paparozzi for first experiments on the visualization of co-phylogenetic trees. Moreover, we are grateful to Marie-France Sagot and Blerina Sinaimeri for proposing us the problem and for the interesting discussions.

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Copyright information

© Springer International Publishing AG 2018

Authors and Affiliations

  • Tiziana Calamoneri
    • 1
  • Valentino Di Donato
    • 2
  • Diego Mariottini
    • 2
  • Maurizio Patrignani
    • 2
  1. 1.Computer Science DepartmentUniversity of Rome “Sapienza”RomeItaly
  2. 2.Engineering DepartmentRoma Tre UniversityRomeItaly

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