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An Emerging Role for Polystores in Precision Medicine

  • Edmon Begoli
  • J. Blair Christian
  • Vijay Gadepally
  • Stavros Papadopoulos
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 10494)

Abstract

Medical data is organically heterogeneous, and it usually varies significantly in both size and composition. Yet, this data is also a key for the recent and promising field of precision medicine, which focuses on identifying and tailoring appropriate medical treatments for the needs of the individual patients, based on their specific conditions, their medical history, lifestyle, genetic, and other individual factors. As we, and a database community at large, recognize that a “one size does not fit all” solution is required to work with such data, we present our observations based on our experiences, and the applications in the field of precision medicine. We make the case for the use of polystore architecture; how it applies for precision medicine; we discuss the reference architecture; describe some of its critical components (array database); and discuss the specific types of analysis that directly benefit from this database architecture, and the ways it serves the data.

Keywords

Polystore Precision medicine Genomics Array database 

Notes

Acknowledgments

This manuscript has been in part authored by UT-Battelle, LLC, under contract DE-AC05-00OR22725 with the U.S. Department of Energy, and under a joint program (MVP CHAMPION), between the U.S. Department of Energy, and the U.S. Department of Veterans Affairs.

The authors would like to thank the Intel Science and Technology Center (ISTC) for Big Data and the BigDAWG contributors (https://bigdawg.mit.edu/contributors) for their role in developing the BigDAWG system.

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Copyright information

© Springer International Publishing AG 2017

Authors and Affiliations

  • Edmon Begoli
    • 1
  • J. Blair Christian
    • 1
  • Vijay Gadepally
    • 2
  • Stavros Papadopoulos
    • 3
  1. 1.Oak Ridge National LaboratoryOak RidgeUSA
  2. 2.Massachusetts Institute of Technology (MIT), Lincoln LaboratoryLexingtonUSA
  3. 3.TileDB, Inc.CambridgeUSA

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