CNI 2017: Connectomics in NeuroImaging pp 51-59 | Cite as
High-order Connectomic Manifold Learning for Autistic Brain State Identification
Abstract
Previous studies have identified disordered functional (from fMRI) and structural (from diffusion MRI) brain connectivities in Autism Spectrum Disorder (ASD). However, ‘shape connections’ between brain regions were rarely investigated in ASD – e.g., how morphological attributes of a specific brain region (e.g., sulcal depth) change in relation to morphological attributes in other regions. In this paper, we use conventional T1-w MRI to define morphological connectivity networks, each quantifying shape similarity between different cortical regions for a specific cortical attribute at both low-order and high-order levels. For ASD identification, we present a connectomic manifold learning framework, which learns multiple kernels to estimate a similarity measure between ASD and normal controls (NC) connectomic features, to perform dimensionality reduction for clustering ASD and NC subjects. We benchmark our ASD identification method against supervised and unsupervised state-of-the-art methods, while depicting the most discriminative high- and low-order relationships between morphological regions in the left and right hemispheres.
References
- 1.Price, T., Wee, C.-Y., Gao, W., Shen, D.: Multiple-network classification of childhood autism using functional connectivity dynamics. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8675, pp. 177–184. Springer, Cham (2014). doi: 10.1007/978-3-319-10443-0_23 Google Scholar
- 2.Koshino, H., Carpenter, P.A., Minshew, N.J., Cherkassky, V.L., Keller, T.A., Just, M.A.: Functional connectivity in an fMRI working memory task in high-functioning autism. Neuroimage 24, 810–21 (2005)CrossRefGoogle Scholar
- 3.Uddin, L.Q., Supekar, K., Lynch, C.J., Khouzam, A., Phillips, J., Feinstein, C., Ryali, S., Menon, V.: Salience network-based classification and prediction of symptom severity in children with autism. JAMA Psychiatry 70, 869–879 (2013)CrossRefGoogle Scholar
- 4.Liu, M., Du, J., Jie, B., Zhang, D.: Ordinal patterns for connectivity networks in brain disease diagnosis. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9900, pp. 1–9. Springer, Cham (2016). doi: 10.1007/978-3-319-46720-7_1 CrossRefGoogle Scholar
- 5.Ghanbari, Y., Smith, A.R., Schultz, R.T., Verma, R.: Connectivity subnetwork learning for pathology and developmental variations. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013. LNCS, vol. 8149, pp. 90–97. Springer, Heidelberg (2013). doi: 10.1007/978-3-642-40811-3_12 CrossRefGoogle Scholar
- 6.Jbabdi, S., Johansen-Berg, H.: Tractography: where do we go from here? Brain Connect 1, 169–183 (2012)CrossRefGoogle Scholar
- 7.Smith, E., Thurm, A., Greenstein, D., Farmer, C., Swedo, S., Giedd, J., Raznahan, A.: Cortical thickness change in autism during early childhood. Hum. Brain Mapp. 37, 2616–2629 (2016)CrossRefGoogle Scholar
- 8.Chen, X., Zhang, H., Shen, D.: Ensemble hierarchical high-order functional connectivity networks for MCI classification. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 18–25. Springer, Cham (2016). doi: 10.1007/978-3-319-46723-8_3 CrossRefGoogle Scholar
- 9.Brown, C., Hamarneh, G.: Machine learning on human connectome data from MRI, arXiv:1611.08699v1 (2016)
- 10.Iidaka, T.: Resting state functional magnetic resonance imaging and neural network classified autism and control. Cortex 63, 55–67 (2014). ElsevierCrossRefGoogle Scholar
- 11.Li, H., Xue, Z., Ellmore, T.M., Frye, R.E., Wong, S.T.: Identification of faulty DTI-based sub-networks in autism using network regularized SVM. In: IEEE ISBI (2012)Google Scholar
- 12.Wang, X., Sontag, D., Wang, F.: Unsupervised learning of disease progression models. In: Proceedings of the KDD 2014, pp. 85–94 (2014)Google Scholar
- 13.Gao, H., et al.: Identifying connectome module patterns via new balanced multi-graph normalized cut. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9350, pp. 169–176. Springer, Cham (2015). doi: 10.1007/978-3-319-24571-3_21 CrossRefGoogle Scholar
- 14.Chen, H., Iraji, A., Jiang, X., Lv, J., Kou, Z., Liu, T.: Longitudinal analysis of brain recovery after mild traumatic brain injury based on groupwise consistent brain network clusters. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9350, pp. 194–201. Springer, Cham (2015). doi: 10.1007/978-3-319-24571-3_24 CrossRefGoogle Scholar
- 15.Wang, B., Zhu, J., Pierson, E., Ramazzotti, D., Batzoglou, S.: Visualization and analysis of single-cell RNA-SEQ data by kernel-based similarity learning. Nature 70, 869–79 (2017)Google Scholar
- 16.Maaten, L., Hinton, G.: Visualizing data using t-SNE. J. Mach. Learn. Res. 9, 2579–2605 (2008)MATHGoogle Scholar
- 17.Mueller, S.G., Weiner, M.W., Thal, L.J., Petersen, R.C., Jack, C., Jagust, W., Trojanowski, J.Q., Toga, A.W., Beckett, L.: The Alzheimer’s disease neuroimaging initiative. Neuroimaging Clin. North Am. 10, 869–877 (2005)CrossRefGoogle Scholar
- 18.Joe, H., Ward, J.: Hierarchical grouping to optimize an objective function. J. Am. Stat. Assoc. 58, 236–244 (1963)MathSciNetCrossRefGoogle Scholar