Skip to main content

Impact of the Microbiota and Gastric Disease Development by Helicobacter pylori

  • Chapter
  • First Online:

Part of the book series: Current Topics in Microbiology and Immunology ((CT MICROBIOLOGY,volume 400))

Abstract

Microorganisms in humans form complex communities with important functions and differences in each part of the body. The stomach was considered to be a sterile organ until the discovery of Helicobacter pylori, but nowadays, it is possible to demonstrate that other microorganisms beyond H. pylori can colonize the gastric mucosa and that the diverse microbiota ecosystem of the stomach is different from the mouth and the esophagus, and also from the small intestine and large intestine. H. pylori seems to be the most important member of the gastric microbiota with the highest relative abundance when present, but when it is absent, the stomach has a diverse microbiota. Proteobacteria, Firmicutes, Actinobacteria, Bacteroidetes, and Fusobacteria are the most abundant phyla in both H. pylori-positive and H. pylori-negative patients. The gastric commensal flora may play some role in the H. pylori-associated carcinogenicity, and differences in the gastric microbiota composition of patients with gastric cancer, intestinal metaplasia, and chronic gastritis are described. The gastric microbiota changed gradually from non-atrophic gastritis to intestinal metaplasia, and to gastric cancer (type intestinal).

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  • Abdo Z, Schuette UME, Bent SJ, Williams CJ, Forney LJ, Joyce P (2006) Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ Microbiol 8:929–938. doi:10.1111/j.1462-2920.2005.00959.x

    Article  PubMed  Google Scholar 

  • Abreu MT, Peek RM Jr (2014) Gastrointestinal malignancy and the microbiome. Gastroenterology 146(1534–1546):e3. doi:10.1053/j.gastro.2014.01.001

    Google Scholar 

  • Adamsson I, Nord CE, Lundquist P, Sjöstedt S, Edlund C (1999) Comparative effects of omeprazole, amoxycillin plus metronidazole versus omeprazole, clarithromycin plus metronidazole on the oral, gastric and intestinal microflora in Helicobacter pylori-infected patients. J Antimicrob Chemother 44:629–640

    Article  CAS  PubMed  Google Scholar 

  • Amieva M, Peek RM Jr (2016) Pathobiology of Helicobacter pylori-induced Gastric Cancer. Gastroenterology 150(1):64–78. doi:10.1053/j.gastro.2015.09.004

    Article  CAS  PubMed  Google Scholar 

  • Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3:e2836. doi:10.1371/journal.pone.0002836

    Article  PubMed  PubMed Central  Google Scholar 

  • Arthur JC, Perez-Chanona E, Mühlbauer M, Tomkovich S, Uronis JM, Fan T, Campbell BJ, Abujamel T, Dogan B, Rogers AB, Rhodes JM, Stintzi A, Simpson KW, Hansen JJ, Keku TO, Fodor AA, Jobin C (2012) Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338:120–123. doi:10.1126/science.1224820

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Arweiler NB, Netuschil L (2016) The Oral Microbiota. In: Microbiota of the human body. Editors: Schwiertz A. Springer International Publishing, pp 45–60. doi 10.1007/978-3-319-31248-4_4

  • Aviles-Jimenez F, Vazquez-Jimenez F, Medrano-Guzman R, Mantilla A, Torres J (2014) Stomach microbiota composition varies between patients with non-atrophic gastritis and patients with intestinal type of gastric cancer. Sci Rep 4:4202. doi:10.1038/srep04202

    Article  PubMed  PubMed Central  Google Scholar 

  • Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom E a, Francois F, Perez-Perez G, Blaser MJ, Relman DA (2006) Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci USA 103:732–737. doi:10.1073/pnas.0506655103

  • Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie EL (2016) Toward a predictive understanding of earth’s microbiomes to address 21st century challenges. mBio 7(3):e00714–e00716. doi:10.1128/mBio.00714-16

    Article  PubMed  PubMed Central  Google Scholar 

  • Browne HP, Forster SC, Anonye BO, Kumar N, Neville BA, Stares MD, Goulding D, Lawley TD (2016) Culturing of “unculturable” human microbiota reveals novel taxa and extensive sporulation. Nature 533(7604):536–543. doi:10.1038/nature17645

    Article  Google Scholar 

  • Calmels S, Venezia ND, Bartsch H (1990) Isolation of an enzyme catalysing nitrosamine formation in Pseudomonas aeruginosa and Neisseria mucosae. Biochem Biophys Res Commun 171:655–660

    Article  CAS  PubMed  Google Scholar 

  • Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA 108:4516–4522. doi:10.1073/pnas.1000080107

    Article  CAS  PubMed  Google Scholar 

  • Chan YK, Estaki M, Gibson DL (2013) Clinical consequences of diet-induced dysbiosis. Ann Nutr Metab 63:28–40. doi:10.1159/000354902

    Article  CAS  PubMed  Google Scholar 

  • Chung H, Pamp SJ, Hill JA, Surana NK, Edelman SM, Troy EB, Reading NC, Villablanca EJ, Wang S, Mora JR, Umesaki Y, Mathis D, Benoist C, Relman DA, Kasper DL (2012) Gut immune maturation depends on colonization with a host-specific microbiota. Cell 149:1578–1593. doi:10.1016/j.cell.2012.04.037

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Čitar M, Hacin B, Tompa G, Štempelj M, Rogelj I, Dolinšek J, Narat M, Matijašić BB (2015) Human intestinal mucosa-associated Lactobacillus and Bifidobacterium strains with probiotic properties modulate IL-10, IL-6 and IL-12 gene expression in THP-1 cells. Benef Microbes 6:325–336. doi:10.3920/BM2014.0081

    Article  PubMed  Google Scholar 

  • Cryan JF, Dinan TG (2012) Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour. Nat Rev Neurosci 13:701–712. doi:10.1038/nrn3346

    Article  CAS  PubMed  Google Scholar 

  • David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ (2014) Diet rapidly and reproducibly alters the human gut microbiome. Nature 505:559–563. doi:10.1038/nature12820

    Article  CAS  PubMed  Google Scholar 

  • Delgado S, Cabrera-Rubio R, Mira A, Suárez A, Mayo B (2013) Microbiological survey of the human gastric ecosystem using culturing and pyrosequencing methods. Microb Ecol 65:763–772. doi:10.1007/s00248-013-0192-5

    Article  CAS  PubMed  Google Scholar 

  • Dicksved J, Lindberg M, Rosenquist M, Enroth H, Jansson JK, Engstrand L (2009) Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls. J Med Microbiol 58:509–516. doi:10.1099/jmm.0.007302-0

    Article  CAS  PubMed  Google Scholar 

  • Earle KA, Billings G, Sigal M, Lichtman JS, Hansson GC, Elias JE, Amieva MR, Huang KC, Sonnenburg JL (2015) Quantitative imaging of gut microbiota spatial organization. Cell Host Microbe 18(4):478–488. doi:10.1016/j.chom.2015.09.002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Engstrand L, Lindberg M (2013) Helicobacter pylori and the gastric microbiota. Best Pract Res Clin Gastroenterol 27:39–45. doi:10.1016/j.bpg.2013.03.016

    Article  CAS  PubMed  Google Scholar 

  • Eun CS, Kim BK, Han DS, Kim SY, Kim KM, Choi BY, Song KS, Kim YS, Kim JF (2014) Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods. Helicobacter 19:407–416. doi:10.1111/hel.12145

    Article  CAS  PubMed  Google Scholar 

  • Fan W, Huo G, Li X, Yang L, Duan C (2014) Impact of diet in shaping gut microbiota revealed by a comparative study in infants during the first six months of life. J Microbiol Biotechnol 24:133–143. doi:10.4014/jmb.1309.09029

    Article  CAS  PubMed  Google Scholar 

  • Forsythe SJ, Cole JA (1987) Nitrite accumulation during anaerobic nitrate reduction by binary suspensions of bacteria isolated from the achlorhydric stomach. J Gen Microbiol 133:1845–1849

    CAS  PubMed  Google Scholar 

  • Fuchs H-M, Dorfman S, Floch MH (1976) The effect of dietary fiber supplementation in man. II. Alteration in fecal physiology and bacterial flora. Am J Clin Nutr 29:1443–1447

    Google Scholar 

  • Fujimura KE, Slusher NA, Cabana MD, Lynch SV (2010) Role of the gut microbiota in defining human health. Expert Rev Anti Infect Ther 8:435–454. doi:10.1586/eri.10.14

    Article  PubMed  PubMed Central  Google Scholar 

  • Ge Z, Feng Y, Muthupalani S, Eurell LL, Taylor NS, Whary MT, Fox JG (2011) Coinfection with Enterohepatic Helicobacter species can ameliorate or promote Helicobacter pylori-induced gastric pathology in C57BL/6 mice. Infect Immun 79:3861–3871. doi:10.1128/IAI.05357-11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Geva-Zatorsky N, Alvarez D, Hudak JE, Reading NC, Erturk-Hasdemir D, Dasgupta S, von Andrian UH, Kasper DL (2015) In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria. Nat Med 21:1091–1100. doi:10.1038/nm.3929

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goldsmith JR, Sartor RB (2014) The role of diet on intestinal microbiota metabolism: downstream impacts on host immune function and health, and therapeutic implications. J Gastroenterol 49:785–798. doi:10.1007/s00535-014-0953-z

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gotteland M, Brunser O, Cruchet S (2006) Systematic review: are probiotics useful in controlling gastric colonization by Helicobacter pylori? Aliment Pharmacol Ther 23:1077–1086. doi:10.1111/j.1365-2036.2006.02868.x

    Article  CAS  PubMed  Google Scholar 

  • Greub G (2012) Culturomics: a new approach to study the human microbiome. Clin Microbiol Infect 18:1157–1159. doi:10.1111/1469-0691.12032

    Article  CAS  PubMed  Google Scholar 

  • Hartstra AV, Bouter KE, Bäckhed F, Nieuwdorp M (2015) Insights into the role of the microbiome in obesity and type 2 diabetes. Diabetes Care 38:159–165. doi:10.2337/dc14-0769

    Article  CAS  PubMed  Google Scholar 

  • Hattori M, Taylor TD (2009) The human intestinal microbiome: a new frontier of human biology. DNA Res 16:1–12. doi:10.1093/dnares/dsn033

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D’haeseleer P, Holman H-YN, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU (2010) Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 330:204–208. doi:10.1126/science.1195979

  • Heimesaat MM, Fischer A, Plickert R, Wiedemann T, Loddenkemper C, Göbel UB, Bereswill S, Rieder G (2014) Helicobacter pylori induced gastric immunopathology is associated with distinct microbiota changes in the large intestines of long-term infected Mongolian gerbils. PLoS ONE 9:e100362. doi:10.1371/journal.pone.0100362

    Article  PubMed  PubMed Central  Google Scholar 

  • Hirsch C, Tegtmeyer N, Rohde M, Rowland M, Oyarzabal OA, Backert S (2012) Live Helicobacter pylori in the root canal of endodontic-infected deciduous teeth. J Gastroenterol 47:936–940. doi:10.1007/s00535-012-0618-8

    Article  PubMed  Google Scholar 

  • Homan M, Orel R (2015) Are probiotics useful in Helicobacter pylori eradication? World J Gastroenterol 21(37):10644–10653. doi:10.3748/wjg.v21.i37.10644

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hu Y, He L, Xiao D, Liu G (2012) Bacterial flora concurrent with Helicobacter pylori in the stomach of patients with upper gastrointestinal diseases. World J Gastroenterol 18:1257–1261. doi:10.3748/wjg.v18.i11.1257

    Article  PubMed  PubMed Central  Google Scholar 

  • Huang Y-F, Chen S-C, Chiang Y-S, Chen T-H, Chiu K-P (2012) Palindromic sequence impedes sequencing-by-ligation mechanism. BMC Syst Biol 6:S10. doi:10.1186/1752-0509-6-S2-S10

    Article  PubMed  PubMed Central  Google Scholar 

  • Hutchison CA (2007) DNA sequencing: bench to bedside and beyond. Nucleic Acids Res 35:6227–6237. doi:10.1093/nar/gkm688

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • IARC Working Group on the Evaluation of Carcinogenic Risks to Humans (2012) Biological agents. Volume 100 B. A review of human carcinogens. IARC Monogr Eval Carcinog Risks Hum 100(Pt B):1–441

    Google Scholar 

  • Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR (2009) Induction of Intestinal Th17 Cells by segmented filamentous bacteria. Cell 139:485–498. doi:10.1016/j.cell.2009.09.033

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jakobsson HE, Jernberg C, Andersson AF, Sjölund-Karlsson M, Jansson JK, Engstrand L (2010) Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS ONE 5:e9836. doi:10.1371/journal.pone.0009836

    Article  PubMed  PubMed Central  Google Scholar 

  • Jo HJ, Kim J, Kim N, Park JH, Nam RH, Seok Y-J, Kim Y-R, Kim JS, Kim JM, Kim JM, Lee DH, Jung HC (2016) Analysis of gastric microbiota by pyrosequencing: minor role of bacteria other than Helicobacter pylori in the gastric carcinogenesis. Helicobacter. doi:10.1111/hel.12293

    PubMed  Google Scholar 

  • Kazor CE, Mitchell PM, Lee AM, Stokes LN, Loesche WJ, Dewhirst FE, Paster BJ (2003) Diversity of bacterial populations on the tongue dorsa of patients with halitosis and healthy patients. J Clin Microbiol 41:558–563. doi:10.1128/JCM.41.2.558-563.2003

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Khosravi Y, Dieye Y, Poh B (2014) Culturable bacterial microbiota of the stomach of Helicobacter pylori positive and negative gastric disease patients. Sci World 2014:1–10. doi:10.1155/2014/610421

    Google Scholar 

  • Khosravi Y, Bunte RM, Chiow KH, Tan TL, Wong WY, Poh QH, Doli Sentosa IM, Seow SW, Amoyo AA, Pettersson S, Loke MF, Vadivelu J (2016) Helicobacter pylori and gut microbiota modulate energy homeostasis prior to inducing histopathological changes in mice. Gut Microbes 7:48–53. doi:10.1080/19490976.2015.1119990

    Article  PubMed  PubMed Central  Google Scholar 

  • Kienesberger S, Cox LM, Livanos A, Zhang X-S, Chung J, Perez-Perez GI, Gorkiewicz G, Zechner EL, Blaser MJ (2016) Gastric Helicobacter pylori infection affects local and distant microbial populations and host responses. Cell Rep 14:1395–1407. doi:10.1016/j.celrep.2016.01.017

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kim J, Kim N, Jo HJ, Park JH, Nam RH, Seok Y-J, Kim Y-R, Kim JS, Kim JM, Kim JM, Lee DH, Jung HC (2015) An appropriate cutoff value for determining the colonization of Helicobacter pylori by the pyrosequencing method: comparison with conventional methods. Helicobacter 20:370–380. doi:10.1111/hel.12214

    Article  CAS  PubMed  Google Scholar 

  • Lawson RD, Coyle WJ (2010) The noncolonic microbiome: does it really matter? Curr Gastroenterol Rep 12:259–262. doi:10.1007/s11894-010-0111-6

    Article  PubMed  Google Scholar 

  • Lee CW, Rickman B, Rogers AB, Muthupalani S, Takaishi S, Peiying Y, Wang TC, Fox JG (2009) Combination of sulindac and antimicrobial eradication of Helicobacter pylori prevents progression of gastric cancer in hypergastrinemic INS-GAS mice. Cancer Res 69:8166–8174. doi:10.1158/0008-5472.CAN-08-3856

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lertpiriyapong K, Whary MT, Muthupalani S, Lofgren JL, Gamazon ER, Feng Y, Ge Z, Wang TC, Fox JG (2014) Gastric colonisation with a restricted commensal microbiota replicates the promotion of neoplastic lesions by diverse intestinal microbiota in the Helicobacter pylori INS-GAS mouse model of gastric carcinogenesis. Gut 63:54–63. doi:10.1136/gutjnl-2013-305178

    Article  CAS  PubMed  Google Scholar 

  • Leung A, Tsoi H, Yu J (2015) Fusobacterium and Escherichia: models of colorectal cancer driven by microbiota and the utility of microbiota in colorectal cancer screening. Expert Rev Gastroenterol Hepatol 9:651–657. doi:10.1586/17474124.2015.1001745

    Article  CAS  PubMed  Google Scholar 

  • Li X-X, Wong GL-H, To K-F, Wong VW-S, Lai LH, Chow DK-L, Lau JY-W, Sung JJ-Y, Ding C (2009) Bacterial microbiota profiling in gastritis without Helicobacter pylori infection or non-steroidal anti-inflammatory drug use. PLoS ONE 4:e7985. doi:10.1371/journal.pone.0007985

    Article  PubMed  PubMed Central  Google Scholar 

  • Llorca L, Pérez-Pérez G, Urruzuno P, Martínez MJ, Iizumi T, Gao Z, Shon J, Chung J, Cox LM, Simón Soro A, Mira A, Alarcón T (2016a) Characterization of the gastric microbiota in a pediatric population according to Helicobacter pylori status. Pediatr Infect Dis J. (in press)

    Google Scholar 

  • Llorca L, Pérez G, Urruzuno P, Martínez MJ, Alarcón T (2016b) Relationship between histological findings and body mass index (BMI) with gastric microbiome, including Helicobacter pylori, in a paediatric population (Oral communication). In: 26th ECCMID (European Congres of Clinical Microbiology and Infectious Diseases). Ámsterdam, April 2016

    Google Scholar 

  • Lofgren JL, Whary MT, Ge Z, Muthupalani S, Taylor NS, Mobley M, Potter A, Varro A, Eibach D, Suerbaum S, Wang TC, Fox JG (2011) Lack of commensal flora in helicobacter pylori-infected INS-GAS mice reduces gastritis and delays intraepithelial neoplasia. Gastroenterology 140:210–220. doi:10.1053/j.gastro.2010.09.048

    Article  PubMed  Google Scholar 

  • Lozupone CA, Knight R (2008) Species divergence and the measurement of microbial diversity. FEMS Microbiol Rev 32:557–578. doi:10.1111/j.1574-6976.2008.00111.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lozupone CA, Hamady M, Kelley ST, Knight R (2007) Quantitative and qualitative Beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73:1576–1585. doi:10.1128/AEM.01996-06

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lukic J, Strahinic I, Milenkovic M, Golic N, Kojic M, Topisirovic L, Begovic J (2013) Interaction of Lactobacillus fermentum BGHI14 with rat colonic mucosa: implications for colitis induction. Appl Environ Microbiol 79(18):5735–5744. doi:10.1128/AEM.01807-13

  • Lundberg JO, Weitzberg E (2013) Biology of nitrogen oxides in the gastrointestinal tract. Gut 62:616–629. doi:10.1136/gutjnl-2011-301649

    Article  CAS  PubMed  Google Scholar 

  • Maldonado-Contreras A, Goldfarb KC, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser MJ, Brodie EL, Dominguez-Bello MG (2011) Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J 5:574–579. doi:10.1038/ismej.2010.149

    Article  CAS  PubMed  Google Scholar 

  • Martin ME, Solnick JV (2014) The gastric microbial community, Helicobacter pylori colonization, and disease. Gut Microbes 5:345–350. doi:10.4161/gmic.28573

    Article  PubMed  PubMed Central  Google Scholar 

  • Mason KL, Downward JRE, Falkowski NR, Young VB, Kao JY, Huffnagle GB (2012) Interplay between the gastric bacterial microbiota and Candida albicans during postantibiotic recolonization and gastritis. Infect Immun 80:150–158. doi:10.1128/IAI.05162-11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Matsuoka K, Kanai T (2015) The gut microbiota and inflammatory bowel disease. Semin Immunopathol 37:47–55. doi:10.1007/s00281-014-0454-4

    Article  CAS  PubMed  Google Scholar 

  • Moore WE, Holdeman LV (1974) Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol 27:961–979

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mowat C, Williams C, Gillen D, Hossack M, Gilmour D, Carswell A, Wirz A, Preston T, McColl KE (2000) Omeprazole, Helicobacter pylori status, and alterations in the intragastric milieu facilitating bacterial N-nitrosation. Gastroenterology 119:339–347. doi:10.1053/gast.2000.9367

    Article  CAS  PubMed  Google Scholar 

  • Musso G, Gambino R, Cassader M (2011) Interactions between gut microbiota and host metabolism predisposing to obesity and diabetes. Annu Rev Med 62:361–380. doi:10.1146/annurev-med-012510-175505

    Article  CAS  PubMed  Google Scholar 

  • Nardone G, Compare D (2015) The human gastric microbiota: Is it time to rethink the pathogenesis of stomach diseases? United Eur Gastroenterol J 3:255–260. doi:10.1177/2050640614566846

    Article  CAS  Google Scholar 

  • Nguyen NP, Warnow T, Pop M, White B (2016) A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity. npj Biofilms Microbiomes 2. doi:10.1038/npjbiofilms.2016.4

  • Nikolaki S, Tsiamis G (2013) Microbial diversity in the era of omic technologies. Biomed Res Int. doi:10.1155/2013/958719

    PubMed  PubMed Central  Google Scholar 

  • Oh B, Kim BS, Kim JW, Kim JS, Koh SJ, Kim BG, Lee KL, Chun J (2016) The effect of probiotics on gut microbiota during the Helicobacter pylori eradication: randomized controlled trial. Helicobacter 21(3):165–174. doi:10.1111/hel.12270

    Article  CAS  PubMed  Google Scholar 

  • Osaki T, Matsuki T, Asahara T, Zapoòman C, Hanawa T, Yonezawa H, Kurata S, Woo TD, Nomoto K, Kamiya S (2012) Comparative analysis of gastric bacterial microbiota in Mongolian gerbils after long-term infection with Helicobacter pylori. Microb Pathog 53:12–18

    Article  PubMed  Google Scholar 

  • Peterson J, Garges S, Giovanni M, McInnes P, Wang L, Schloss JA, Bonazzi V, McEwen JE, Wetterstrand KA, Deal C, Baker CC, Di Francesco V, Howcroft TK, Karp RW, Lunsford RD, Wellington CR, Belachew T, Wright M, Giblin C, David H, Mills M, Salomon R, Mullins C, Akolkar B, Begg L, Davis C, Grandison L, Humble M, Khalsa J, Little AR, Peavy H, Pontzer C, Portnoy M, Sayre MH, Starke-Reed P, Zakhari S, Read J, Watson B, Guyer M. NIH HMP Working Group (2009) The NIH human microbiome project. Genome Res 19:2317–2323. doi:10.1101/gr.096651.109

  • Polk DB, Peek RM Jr (2010) Helicobacter pylori: gastric cáncer and beyond. Nat Rev Cancer 10:403–414. doi:10.1038/nrc2857

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Preston A (2003) Choosing a cloning vector. Methods Mol Biol 235:19–26. doi:10.1385/1-59259-409-3:19

    CAS  PubMed  Google Scholar 

  • Propheter DC, Hooper LV (2015) Bacteria come into focus: new tools for visualizing the microbiota. Cell Host Microbe 18(4):392–394. doi:10.1016/j.chom.2015.10.004

    Article  CAS  PubMed  Google Scholar 

  • Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J; MetaHIT Consortium, Bork P, Ehrlich SD, Wang J (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59–65. doi:10.1038/nature08821

  • Rao A, Jump RL, Pultz NJ, Pultz MJ, Donskey CJ (2006) In vitro killing of nosocomial pathogens by acid and acidified nitrite. Antimicrob Agents Chemother 50:3901–3904. doi:10.1128/AAC.01506-05

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Salonen A (2014) Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals. PLoS ONE 9:e90702. doi:10.1371/journal.pone.0090702

    Article  PubMed  PubMed Central  Google Scholar 

  • Sanduleanu S, Jonkers D, De Bruine A, Hameeteman W, Stockbrügger RW (2001) Non-Helicobacter pylori bacterial flora during acid-suppressive therapy: differential findings in gastric juice and gastric mucosa. Aliment Pharmacol Ther 15:379–388. doi:10.1046/j.1365-2036.2001.00888.x

    Article  CAS  PubMed  Google Scholar 

  • Savage DC (1977) Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31:107–133. doi:10.1146/annurev.mi.31.100177.000543

    Article  CAS  PubMed  Google Scholar 

  • Schulz C, Koch N, Schütte K, Pieper DH, Malfertheiner P (2015) H. pylori and its modulation of gastrointestinal microbiota. J Dig Dis 16(3):109–117. doi:10.1111/1751-2980.12233

    Article  PubMed  Google Scholar 

  • Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C (2011) Metagenomic biomarker discovery and explanation. Genome Biol 12:R60. doi:10.1186/gb-2011-12-6-r60

    Article  PubMed  PubMed Central  Google Scholar 

  • Sekirov I, Russell SL, Antunes LCM, Finlay BB (2010) Gut microbiota in health and disease. Physiol Rev 90:859–904. doi:10.1152/physrev.00045.2009

    Article  CAS  PubMed  Google Scholar 

  • Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26:1135–1145. doi:10.1038/nbt1486

    Article  CAS  PubMed  Google Scholar 

  • Sjöstedt S, Heimdahl A, Kager L, Nord CE (1985) Microbial colonization of the oropharynx, esophagus and stomach in patients with gastric diseases. Eur J Clin Microbiol 4:49–51. doi:10.1007/BF02148660

    Article  PubMed  Google Scholar 

  • Sjöstedt S, Kager L, Heimdahl A, Nord CE (1988) Microbial colonization of tumors in relation to the upper gastrointestinal tract in patients with gastric carcinoma. Ann Surg 207:341–346

    Article  PubMed  PubMed Central  Google Scholar 

  • Stockbrugger RW, Cotton PB, Eugenides N, Bartholomew BA, Hill MJ, Walters CL (1982) Intragastric nitrites, nitrosamines, and bacterial overgrowth during cimetidine treatment. Gut 23:1048–1054

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Streit WR, Schmitz RA (2004) Metagenomics—the key to the uncultured microbes. Curr Opin Microbiol 7:492–498. doi:10.1016/j.mib.2004.08.002

    Article  CAS  PubMed  Google Scholar 

  • Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI (2007) The human microbiome project. Nature 449:804–810. doi:10.1038/nature06244

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ursell LK, Metcalf JL, Parfrey LW, Knight R (2012) Defining the human microbiome. Nutr Rev 70(Suppl 1):S38–S44. doi:10.1111/j.1753-4887.2012.00493.x

    Article  PubMed  PubMed Central  Google Scholar 

  • Van Den Bogert B, Boekhorst J, Herrmann R, Smid EJ, Zoetendal EG, Kleerebezem M (2013) Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. PLoS ONE 8:e83418. doi:10.1371/journal.pone.0083418

    Article  PubMed  PubMed Central  Google Scholar 

  • Vesper BJ, Jawdi A, Altman KW, Haines GK 3rd, Tao L, Radosevich JA (2009) The effect of proton pump inhibitors on the human microbiota. Curr Drug Metab 10:84–89. doi:10.2174/138920009787048392

    Article  CAS  PubMed  Google Scholar 

  • Wang L, Zhou J, Xin Y, Geng C, Tian Z, Yu X, Dong Q (2016) Bacterial overgrowth and diversification of microbiota in gastric cancer. Eur J Gastroenterol Hepatol 28(3):261–266. doi:10.1097/MEG.0000000000000542

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Whittaker R (1972) Evolution and measurement of species diversity. Taxon 21:213–251

    Article  Google Scholar 

  • Williams C, McColl KEL (2006) Review article: proton pump inhibitors and bacterial overgrowth. Aliment Pharmacol Ther 23:3–10. doi:10.1111/j.1365-2036.2006.02707.x

    Article  CAS  PubMed  Google Scholar 

  • Winter SE, Winter MG, Xavier MN, Thiennimitr P, Poon V, Keestra AM, Laughlin RC, Gomez G, Wu J, Lawhon SD, Popova IE, Parikh SJ, Adams LG, Tsolis RM, Stewart VJ, Bäumler AJ (2013) Host-derived nitrate boosts growth of E. coli in the inflamed gut. Science 339:708–711. doi:10.1126/science.1232467

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu WM, Yang YS, Peng LH (2014) Microbiota in the stomach: new insights. J Dig Dis 15:54–61. doi:10.1111/1751-2980.12116

    Article  PubMed  Google Scholar 

  • Yang I, Nell S, Suerbaum S (2013) Survival in hostile territory: the microbiota of the stomach. FEMS Microbiol Rev 37:736–761. doi:10.1111/1574-6976.12027

    Article  CAS  PubMed  Google Scholar 

  • Yang I, Woltemate S, Piazuelo MB, Bravo LE, Yepez MC, Romero-Gallo J, Delgado AG, Wilson KT, Peek RM, Correa P, Josenhans C, Fox JG, Suerbaum S (2016) Different gastric microbiota compositions in two human populations with high and low gastric cancer risk in Colombia. Sci Rep 6:18594. doi:10.1038/srep18594

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoon SS, Kim E-K, Lee W-J (2015) Functional genomic and metagenomic approaches to understanding gut microbiota-animal mutualism. Curr Opin Microbiol 24:38–46. doi:10.1016/j.mib.2015.01.007

    Article  CAS  PubMed  Google Scholar 

  • Zhao L (2013) The gut microbiota and obesity: from correlation to causality. Nat Rev Microbiol 11:639–647. doi:10.1038/nrmicro3089

    Article  CAS  PubMed  Google Scholar 

  • Zilberstein B, Quintanilha AG, Santos MAA, Pajecki D, Moura EG, Alves PRA, Maluf Filho F, de Souza JAU, Gama-Rodrigues J (2007) Digestive tract microbiota in healthy volunteers. Clinics (Sao Paulo) 62:47–54. doi:10.1590/S1807-59322007000100008

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Guillermo Perez-Perez .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this chapter

Cite this chapter

Alarcón, T., Llorca, L., Perez-Perez, G. (2017). Impact of the Microbiota and Gastric Disease Development by Helicobacter pylori . In: Tegtmeyer, N., Backert, S. (eds) Molecular Pathogenesis and Signal Transduction by Helicobacter pylori. Current Topics in Microbiology and Immunology, vol 400. Springer, Cham. https://doi.org/10.1007/978-3-319-50520-6_11

Download citation

Publish with us

Policies and ethics