Matching Models Across Abstraction Levels with Gaussian Processes
- 708 Downloads
Biological systems are often modelled at different levels of abstraction depending on the particular aims/resources of a study. Such different models often provide qualitatively concordant predictions over specific parametrisations, but it is generally unclear whether model predictions are quantitatively in agreement, and whether such agreement holds for different parametrisations. Here we present a generally applicable statistical machine learning methodology to automatically reconcile the predictions of different models across abstraction levels. Our approach is based on defining a correction map, a random function which modifies the output of a model in order to match the statistics of the output of a different model of the same system. We use two biological examples to give a proof-of-principle demonstration of the methodology, and discuss its advantages and potential further applications.
KeywordsComputational abstraction Emulation Gaussian Processes Heteroschedasticity
- 6.Caravagna, G.: Formal modeling and simulation of biological systems with delays. Ph.D. thesis, University of Pisa (2011)Google Scholar
- 10.Lawrence, N.D., Sanguinetti, G., Rattray, M.: Modelling transcriptional regulation using gaussian processes. In: Advances in Neural Information Processing Systems, pp. 785–792 (2006)Google Scholar