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Reachability in Resource-Bounded Reaction Systems

  • Alberto Dennunzio
  • Enrico Formenti
  • Luca Manzoni
  • Antonio E. Porreca
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 9618)

Abstract

Reaction systems, a formalism describing biochemical reactions in terms of sets of reactants, inhibitors, and products, are known to have a PSPACE-complete configuration reachability problem. We show that the complexity of the problem remains unchanged even for some classes of resource-bounded reaction systems, where we disallow either inhibitors or reactants. We also prove that the complexity decreases to NP in the specific case of inhibitorless reaction systems using only one reactant per reaction.

Keywords

Unconventional models of computation Natural computing Reaction systems Discrete dynamical systems Reachability 

Notes

Acknowledgments

This work has been partially supported by Fondo di Ateneo (FA) 2013 grants of Università degli Studi di Milano-Bicocca: “Complessità computazionale in modelli di calcolo bioispirati: Sistemi a membrane e sistemi a reazioni” and “Sistemi complessi e incerti: Teoria ed applicazioni”.

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Copyright information

© Springer International Publishing Switzerland 2016

Authors and Affiliations

  • Alberto Dennunzio
    • 1
  • Enrico Formenti
    • 2
  • Luca Manzoni
    • 1
  • Antonio E. Porreca
    • 1
  1. 1.Dipartimento di Informatica, Sistemistica e ComunicazioneUniversità Degli Studi di Milano-BicoccaMilanoItaly
  2. 2.University of Nice Sophia Antipolis, CNRS, I3S, UMR 7271Sophia AntipolisFrance

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