Big Data Curation
With the emergence of data environments with growing data variety and volume, organizations need to be supported by processes and technologies that allow them to produce and maintain high-quality data facilitating data reuse, accessibility, and analysis. In contemporary data management environments, data curation infrastructures have a key role in addressing the common challenges found across many different data production and consumption environments. Recent changes in the scale of the data landscape bring major changes and new demands to data curation processes and technologies. This chapter investigates how the emerging big data landscape is defining new requirements for data curation infrastructures and how curation infrastructures are evolving to meet these challenges. Different dimensions of scaling-up data curation for big data are described, including emerging technologies, economic models, incentive models, social aspects, and supporting standards. This analysis is grounded by literature research, interviews with domain experts, surveys, and case studies and provides an overview of the state-of-the-art, future requirements and emerging trends in the field.
One of the key principles of data analytics is that the quality of the analysis is dependent on the quality of the information analysed. Gartner estimates that more than 25 % of critical data in the world’s top companies is flawed (Gartner 2007). Data quality issues can have a significant impact on business operations, especially when it comes to the decision-making processes within organizations (Curry et al. 2010).
The emergence of new platforms for decentralized data creation such as sensor and mobile platforms, the increasing availability of open data on the web (Howe et al. 2008), added to the increase in the number of data sources inside organizations (Brodie and Liu 2010), brings an unprecedented volume of data to be managed. In addition to the data volume, data consumers in the big data era need to cope with data variety, as a consequence of the decentralized data generation, where data is created under different contexts and requirements. Consuming third-party data comes with the intrinsic cost of repurposing, adapting, and ensuring data quality for its new context.
Data curation provides the methodological and technological data management support to address data quality issues maximizing the usability of the data. According to Cragin et al. (2007), “Data curation is the active and on-going management of data through its lifecycle of interest and usefulness; … curation activities enable data discovery and retrieval, maintain quality, add value, and provide for re-use over time”. Data curation emerges as a key data management process where there is an increase in the number of data sources and platforms for data generation.
6.2 Key Insights for Big Data Curation
eScience and eGovernment are the innovators while biomedical and media companies are the early adopters.
The demand for data interoperability and reuse on eScience and the demand for effective transparency through open data in the context of eGovernment are driving data curation practices and technologies. These sectors play the roles of visionaries and innovators in the data curation technology adoption lifecycle. From the industry perspective, organizations in the biomedical space, such as pharmaceutical companies, play the role of early adopters, driven by the need to reduce the time-to-market and lower the costs of the drug discovery pipelines. Media companies are also early adopters, driven by the need to organize large unstructured data collections, to reduce the time to create new products, repurposing existing data, and to improve accessibility and visibility of information artefacts.
The core impact of data curation is to enable more complete and high-quality data-driven models for knowledge organizations.
More complete models support a larger number of answers through data analysis. Data curation practices and technologies will progressively become more present in contemporary data management environments, facilitating organizations and individuals to reuse third-party data in different contexts, reducing the barriers for generating content with high data quality. The ability to efficiently cope with data quality andheterogeneityissues at scale will support data consumers on the creation of more sophisticated models, highly impacting the productivity of knowledge-driven organizations.
Data curation depends on the creation of an incentives structure.
As an emergent activity, there is still vagueness and poor understanding on the role of data curation inside the big data lifecycle. In many projects the data curation costs are not estimated or are underestimated. The individuation and recognition of the data curator role and of data curation activities depends on realistic estimates of the costs associated with producing high-quality data. Funding boards can support this process by requiring an explicit estimate of the data curation resources on public funded projects with data deliverables and by requiring the publication of high-quality data. Additionally, the improvement of the tracking and recognition of data and infrastructure as a first-class scientific contribution is also a fundamental driver for methodological and technological innovation for data curation and for maximizing the return of investment and reusability of scientific outcomes. Similar recognition is needed within the enterprise context.
Emerging economic models can support the creation of data curation infrastructures.
Pre-competitive and public-privatepartnerships are emerging economic models that can support the creation of data curation infrastructures and the generation of high-quality data. Additionally, the justification for the investment on data curation infrastructures can be supported by a better quantification of the economic impact of high-quality data.
Curation at scale depends on the interplay between automated curation platforms and collaborative approaches leveraging large pools of data curators.
Improving the scale of data curation depends on reducing the cost per data curation task and increasing the pool of data curators. Hybrid human-algorithmic data curation approaches and the ability to compute the uncertainty of the results of algorithmic approaches are fundamental for improving the automation of complex curation tasks. Approaches for automating data curation tasks such as curation by demonstration can provide a significant increase in the scale of automation. Crowdsourcing also plays an important role in scaling-up data curation, allowing access to large pools of potential data curators. The improvement of crowdsourcing platforms towards more specialized, automated, reliable, and sophisticated platforms and the improvement of the integration between organizational systems and crowdsourcing platforms represent an exploitable opportunity in this area.
The improvement of human–data interaction is fundamental for data curation.
Improving approaches in which curators can interact with data impacts curation efficiency and reduces the barriers for domain experts and casual users to curate data. Examples of key functionalities in human–data interaction include natural language interfaces, semantic search, data summarization and visualization, and intuitive data transformation interfaces.
Data-level trust and permission management mechanisms are fundamental to supporting data management infrastructures for data curation.
Provenance management is a key enabler of trust for data curation, providing curators the context to select data that they consider trustworthy and allowing them to capture their data curation decisions. Data curation also depends on mechanisms to assign permissions and digital rights at the data level.
Data and conceptual model standards strongly reduce the data curation effort.
A standards-based data representation reduces syntactic and semantic heterogeneity, improving interoperability. Data model and conceptual model standards (e.g. vocabularies and ontologies) are available in different domains. However, their adoption is still growing.
There is the need for improved theoretical models and methodologies for data curation activities.
Theoretical models and methodologies for data curation should concentrate on supporting the transportability of the generated data under different contexts, facilitating the detection of data quality issues and improving the automation of data curation workflows.
Better integration between algorithmic and human computation approaches is required.
The growing maturity of data-driven statistical techniques in fields such as Natural Language Processing (NLP) and Machine Learning (ML) is shifting their use from academic to industry environments. Many NLP and ML tools have uncertainty levels associated with their results and are dependent on training over large datasets. Better integration between statistical approaches and human computation platforms is essential to allow the continuous evolution of statistical models by the provision of additional training data and also to minimize the impact of errors in the results.
6.3 Emerging Requirements for Big Data Curation
Many big data scenarios are associated with reusing and integrating data from a number of different data sources. This perception is recurrent across data curation experts and practitioners and it is reflected in statements such as: “a lot of big data is a lot of small data put together”, “most of big data is not a uniform big block”, “each data piece is very small and very messy, and a lot of what we are doing there is dealing with that variety” (Data Curation Interview: Paul Groth 2014).
Reusing data that was generated under different requirements comes with the intrinsic price of coping with data quality and data heterogeneity issues. Data can be incomplete or may need to be transformed in order to be rendered useful. Kevin Ashley, director of Digital Curation Centre, summarizes the mind-set behind data reuse: “… [it is] when you simply use what is there, which may not be what you would have collected in an ideal world, but you may be able to derive some useful knowledge from it” (Kevin Ashley 2014). In this context, data shifts from a resource that is tailored from the start to a certain purpose, to a raw material that will need to be repurposed in different contexts in order to satisfy a particular requirement.
In this scenario data curation emerges as a key data management activity. Data curation can be seen from a data generation perspective (curation at source), where data is represented in a way that maximizes its quality in different contexts. Experts emphasize this as an important aspect of data curation: From the data science aspect, methodologies are needed to describe data so that it is actually reusable outside its original context (Kevin Ashley 2014). This points to the demand to investigate approaches which maximize the quality of the data in multiple contexts with a minimum curation effort: “we are going to curate data in a way that makes it usable ideally for any question that somebody might try to ask the data” (Kevin Ashley 2014). Data curation can also be done at the data consumption side where data resources are selected and transformed to fit a set of requirements from the data consumption side.
Data curation activities are heavily dependent on the challenges of scale, in particular data variety, that emerges in the big data context. James Cheney, research fellow at the University of Edinburgh, observes “Big Data seems to be about addressing challenges of scale, in terms of how fast things are coming out at you versus how much it costs to get value out of what you already have”. Coping with data variety can be costly even for smaller amounts of data: “you can have Big Data challenges not only because you have Petabytes of data but because data is incredibly varied and therefore consumes a lot of resources to make sense of it”.
While in the big data context the expression data variety is used to express the data management trend of coping with data from different sources, the concepts of data quality (Wang and Strong 1996; Knight and Burn 2005) and data heterogeneity (Sheth 1999) have been well established in the database literature and provide a precise ground for understanding the tasks involved in data curation.
Despite the fact that data heterogeneity and data quality were concerns already present before the big data scale era (Wang and Strong 1996; Knight and Burn 2005), they become more prevalent in data management tasks with the growth in the number of data sources. This growth brought the need to define principles and scalable approaches for coping with data quality issues. It also brought data curation from a niche activity, restricted to a small community of scientists and analysts with high data quality standards, to a routine data management activity, which will progressively become more present within the average data management environment.
The central challenge of data curation models in the big data era is to deal with the long tail of data and to improve data curationscalability, by reducing thecost of data curation and increasing the number of data curators (Fig. 6.2), allowing data curation tasks to be addressed under limited time constraints.
Scaling up data curation is a multidisciplinary problem that requires the development of economic models, social structures,incentivemodels, and standards, in coordination with technological solutions. The connection between these dimensions and data curation scalability is at the centre of the future requirements and future trends for data curation.
6.4 Social and Economic Impact of Big Data Curation
The growing availability of data brings the opportunity for people to use them to inform their decision-making process, allowing data consumers to have a more complete data-supported picture of reality. While some big data use cases are based on large scale but small schema and regular datasets, other decision-making scenarios depend on the integration of complex, multi-domain, and distributed data. The extraction of value from information coming from different data sources is dependent on the feasibility of integrating and analysing these data sources.
Decision-makers can range from molecular biologists to government officials or marketing professionals and they have in common the need to discover patterns and create models to address a specific task or a business objective. These models need to be supported by quantitative evidence. While unstructured data (such as text resources) can support the decision-making process, structured dataprovides users greater analytical capabilities, by defining a structured representation associated with the data. This allows users to compare, aggregate, and transform data. With more data available, the barrier of data acquisition is reduced. However, to extract value from it, data needs to be systematically processed, transformed, and repurposed into a new context.
Areas that depend on the representation of multi-domain and complex models are leading the data curation technology lifecycle. eScience projects lead the experimentation and innovation on data curation and are driven by the need to create infrastructures for improving reproducibility and large-scale multidisciplinary collaboration in science. They play the role of visionaries in the technology adoption lifecycle for advanced data curation technologies (see Use Cases Section).
In the early adopter phase of the lifecycle, the biomedical industry (in particular, the pharmaceutical industry) is the main player, driven by the need of reducing the costs and time-to-market of drug discovery pipelines (Data Curation Interview: Nick Lynch 2014). For pharmaceutical companies data curation is central to organizational data management and third-party data integration. Following a different set of requirements, themediaindustry is also positioned as early adopters, using data curation pipelines to classify large collections of unstructured resources (text and video), improving the data consumption experience through better accessibility and maximizing its reuse under different contexts. The third major early adopters are governments, targeting transparency through open data projects (Shadbolt et al. 2012).
Data curation enables the extraction of value from data, and it is a capability that is required for areas that are dependent on complex and/or continuous data integration and classification. The improvement of data curation tools and methods directly provides greater efficiency of the knowledge discovery process, maximizes return of investment per data item through reuse, and improves organizational transparency.
6.5 Big Data Curation State of the Art
This section concentrates on briefly describing the technologies that are widely adopted and established approaches for data curation, while the next section focuses on the future requirements and emerging approaches.
Master Data Management
is composed of the processes and tools that support a single point of reference for the data of an organization, an authoritative data source. Master Data Management (MDM) tools can be used to remove duplicates and standardize data syntax, as an authoritative source of master data. MDM focuses on ensuring that an organization does not use multiple and inconsistent versions of the same master data in different parts of its systems. Processes in MDM include source identification, data transformation, normalization, rule administration, error detection and correction, data consolidation, data storage, classification, taxonomy services, schema mapping, and semantic enrichment.
Synchronizing master data across multiple instances of an enterprise application
Coordinating master data management during an application migration
Compliance and performance management reporting across multiple analytic systems
Rowe (2012) provides an analysis on how 163 organizations implement MDM and its business impact.
Curation at Source
Sheer curationor curation-at-source is an approach to curate data where lightweight curation activities are integrated into the normal workflow of those creating and managing data and other digital assets (Curry et al. 2010). Sheer curation activities can include lightweight categorization and normalization activities. An example would be vetting or “rating” the results of a categorization process performed by a curation algorithm. Sheer curation activities can also be composed with other curation activities, allowing more immediate access to curated data while also ensuring the quality control that is only possible with an expert curation team.
Avoid data deposit by integrating with normal workflow tools
Capture provenance information of the workflow
Seamless interfacing with data curation infrastructure
Data curation can be a resource-intensive and complex task, which can easily exceed the capacity of a single individual. Most non-trivial data curation efforts are dependent of a collective data curation set-up, where participants are able to share the costs, risks, and technical challenges. Depending on the domain, data scale, and type of curation activity, data curation efforts can utilize relevant communities through invitation or crowds (Doan et al. 2011). These systems can range from systems with a large and open participation base such as Wikipedia (crowds-based) to systems or more restricted domain expert groups, such as Chemspider.
The notion of “wisdom of crowds” advocates that potentially large groups of non-experts can solve complex problems usually considered to be solvable only by experts (Surowiecki 2005). Crowdsourcing has emerged as a powerful paradigm for outsourcing work at scale with the help of online people (Doan et al. 2011). Crowdsourcing has been fuelled by the rapid development in web technologies that facilitate contributions from millions of online users. The underlying assumption is that large-scale and cheap labour can be acquired on the web. The effectiveness of crowdsourcing has been demonstrated through websites like Wikipedia,1 Amazon Mechanical Turk,2 and Kaggle.3 Wikipedia follows a volunteer crowdsourcing approach where the general public is asked to contribute to the encyclopaedia creation project for the benefit of everyone (Kittur et al. 2007). Amazon Mechanical Turk provides a labour market for crowdsourcing tasks against money (Ipeirotis 2010). Kaggle enables organization to publish problems to be solved through a competition between participants against a predefined reward. Although different in terms of incentive models, all these websites allow access to large numbers of workers, therefore, enabling their use as recruitment platforms for human computation (Law and von Ahn 2011).
General-purpose crowdsourcing service platforms such as CrowdFlower (CrowdFlower Whitepaper 2012) or Amazon Mechanical Turk (Ipeirotis 2010) allow projects to route tasks for a paid crowd. The user of the service is abstracted from the effort of gathering the crowd and offers its tasks for a price in a market of crowd-workers. Crowdsourcing service platforms provide a flexible model and can be used to address ad hoc small-scale data curation tasks (such as a simple classification of thousands of images for a research project), peak data curation volumes (e.g. mapping and translating data in an emergency response situation), or at regular curation volumes (e.g. continuous data curation for a company).
such as Wiki platforms and Content Management Systems (CMSs) allow users to collaboratively create and curate unstructured and structured data. While CMSs focuses on allowing smaller and more restricted groups to collaboratively edit and publish online content (such as News, blogs, and eCommerce platforms), Wikis have proven to scale to very large user bases. As of 2014, Wikipedia counted more than 4,000,000 articles and has a community with more than 130,000 active registered contributors.
Wikipedia uses a wiki as its main system for content construction. Wikis were first proposed by Ward Cunningham in 1995 and allow users to edit contents and collaborate on the web more efficiently. MediaWiki, the wiki platform behind Wikipedia, is already widely used as a collaborative environment inside organizations. Important cases include Intellipedia, a deployment of the MediaWiki platform covering 16 U.S. Intelligence agencies, and Wiki Proteins, a collaborative environment for knowledge discovery and annotation (Mons et al. 2008).
Wikipedia relies on a simple but highly effective way to coordinate its curation process, and accounts and roles are in the base of this system. All users are allowed to edit Wikipedia contents. Administrators, however, have additional permissions in the system (Curry et al. 2010). Most of Wikis and CMS platforms target unstructured and semi-structured data content, allowing users to classify and interlink unstructured content.
6.5.1 Data Curation Platforms
Data Tamer: This prototype aims to replace the current developer-centric extract-transform-load (ETL) process with automated data integration. The system uses a suit of algorithms to automatically map schemas and de-duplicate entities. However, human experts and crowds are leveraged to verify integration updates that are particularly difficult for algorithms.
ZenCrowd: This system tries to address the problem of linking named entities in text with a knowledge base. ZenCrowd bridges the gap between automated and manual linking by improving the results of automated linking with humans. The prototype was demonstrated for linking named entities in news articles with entities in linked open data cloud.
CrowdDB: This database system answers SQL queries that cannot be answered by a database management system or a search engine. As opposed to the exact operation in databases, CrowdDB allows fuzzy operations with the help of humans, for example, ranking items by relevance or comparing equivalence of images.
Qurk: Although similar to CrowdDB, this system tries to improve costs and latency of human-powered sorts and joins. In this regard, Qurk applies techniques such as batching, filtering, and output agreement.
Wikipedia Bots: Wikipedia runs scheduled algorithms to access quality of text articles, known as Bots. These bots also flag articles that require further review by experts. SuggestBot recommends flagged articles to a Wikipedia editor based on their profile.
6.6 Future Requirements and Emerging Trends for Big Data Curation
This section aims at providing a roadmap for data curation based on a set of future requirements for data curation and emerging data curation approaches for coping with the requirements. Both future requirements and the emerging approaches were collected by an extensive analysis of the state-of-the-art approaches.
6.6.1 Future Requirements for Big Data Curation
Future requirements for data curation
Core requirement dimension
Creation of incentives mechanisms for the maintenance and publication of curated datasets
Economic, social, policy
Science, government, environmental, financial, health
Definition of models for the data economy
Social engagement mechanisms
Understanding of social engagement mechanisms
Science, government, environmental
Academia, NGOs, industry
Curation at scale
Reduction of the cost associated with the data curation task (scalability)
Technical, social, economic
Academia, industry, user communities
Improvement of the human–data interaction aspects. Enabling domain experts and casual users to query, explore, transform, and curate data
Inclusion of trustworthiness mechanisms in data curation
Standardization and interoperability
Integration and interoperability between data curation platforms/standardization
Technical, social, policy, methodological
User communities, industry, academia
Investigation of theoretical and domain-specific models for data curation
Better integration between unstructured and structured data and tools
Science, media, health, financial, government
Core Requirement Dimensions: Consists of the main categories needed to address the requirement. The dimensions are technical, social, incentive, methodological, standardization, economic, and policy.
Impact-level: Consists of the impact of the requirement for the data curation field. By its construction, only requirements above a certain impact threshold are listed. Possible values are medium, medium-high, high, very high.
Affected areas: Lists the areas which are most impacted by the requirement. Possible values are science, government, industry sectors (financial, health, media and entertainment, telco, manufacturing), and environmental.
Priority: Covers the level of priority that is associated with the requirement. Possible values are: short-term (<3 years), medium-term (3–7 years), and consolidation (>7 years).
Core Actors: Covers the main actors that should be responsible for addressing the core requirement. Core actors are government, industry, academia, non-governmental organizations, and user communities.
6.6.2 Emerging Paradigms for Big Data Curation
Emerging approaches for addressing the future requirements
Exemplar use case
Incentives creation and social engagement mechanisms
Open and interoperable data policies
Better recognition of the data curation role
Lacking adoption/Despite the exemplar use cases, the data curator role is still not recognized
Chemspider, Wikipedia, Protein Data Bank
Attribution and recognition of data and infrastructure contributions
Standards emerging/Adoption missing
Altmetrics (Priem et al. 2010), ORCID
Better understanding of social engagement mechanisms
Seminal use cases
Pistoia Alliance (Barnes et al. 2009)
Seminal use cases
Geoconnections (Harper 2012)
Quantification of the economic impact of data
Seminal use cases
Technopolis Group (2011) (“Data centres: their use, value and impact”)
Curation at scale
Human computation and Crowdsourcing services
Industry-level adoption/Services are available but there is space for market specialization
CrowdFlower, Amazon Mechanical Turk
Evidence-based measurement models of uncertainty over data
IBM Watson (Ferrucci et al. 2010)
Programming by demonstration, induction of data transformation workflows
Research stage/Fundamental research areas are developed. Lack of applied research in a workflow and data curation context
Curation at source
Existing use cases both in academic projects and industry
The New York Times
General-purpose data curation pipelines
OpenRefine, Karma, Scientific Workflow management systems
Focus ease of interactivity
Seminal tools available
Natural language interfaces, schema-agnostic queries
Capture of data curation decisions
Standards are in place, instrumentation of applications needed
Fine-grained permission management models and tools
Coarse-grained infrastructure available.
Standardization and interoperability
Standardized data model
Standards are available
Reuse of vocabularies
Technologies for supporting vocabulary reuse is needed
Linked Open Data Web (Berners-Lee 2009)
Better integration and communication between tools
Interoperable provenance representation
Standard in place/Standard adoption is still missing
Definition of minimum information models for data curation
MIRIAM (Laibe and Le Novère 2007)
Investigation of theoretical principles and domain-specific models for data curation
Pearl and Bareinboim (2011)
Tools are available, adoption is low
IBM Watson (Ferrucci et al. 2010)
Entity recognition and alignment
Tools are available, adoption is low
22.214.171.124 Social Incentives and Engagement Mechanisms
Open and Interoperable Data Policies
The demand for high-quality data is the driver of the evolution of data curation platforms. The effort to produce and maintain high-quality data needs to be supported by a solid incentives system, which at this point in time is not fully in place. High-quality open data can be one of the drivers of societal impact by supporting more efficient and reproducible science (eScience) (Norris 2007), and more transparent and efficient governments (eGovernment) (Shadbolt et al. 2012). These sectors play the innovators and early adopters roles in the data curation technology adoption lifecycle and are the main drivers of innovation in data curation tools and methods. Funding agencies and policy makers have a fundamental role in this process and should direct and support scientists and government officials to make available their data products in an interoperable way. The demand for high quality and interoperable data can drive the evolution of data curation methods and tools.
Attribution and Recognition of Data and Infrastructure Contributions
From the eScience perspective, scientific and editorial committees of prestigious publications have the power to change the methodological landscape of scholarly communication, by emphasizing reproducibility in the review process and by requiring publications to be supported by high quality data when applicable. From the scientist perspective, publications supported by data can facilitate reproducibility and avoid rework and as a consequence increase scientific efficiency and impact of the scientific products. Additionally, as data becomes more prevalent as a primary scientific product it becomes a citable resource. Mechanisms such as ORCID (Thomson Reuters Technical Report 2013) and Altmetrics (Priem et al. 2010) already provide the supporting elements for identifying, attributing, and quantifying impact outputs such as datasets and software. The recognition of data and software contributions in academic evaluation systems is a critical element for driving high-quality scientific data.
Better Recognition of the Data Curation Role
The cost of publishing high-quality data is not negligible and should be an explicit part of the estimated costs of a project with a data deliverable. Additionally, the methodological impact of data curation requires that the role of the data curator be better recognized across the scientific and publishing pipeline. Some organizations and projects have already a clear definition of different data curator roles. Examples are Wikipedia, New York Times (Curry et al. 2010), and Chemspider (Pence and Williams 2010). The reader is referred to the case studies to understand the activities of different data curation roles.
Better Understanding of Social Engagement Mechanisms
While part of the incentives structure may be triggered by public policies, or by direct financial gain, others may emerge from the direct benefits of being part of a project that is meaningful for a user community. Projects such as Wikipedia, GalaxyZoo (Forston et al. 2011), or FoldIt (Khatib et al. 2011) have collected large bases of volunteer data curators exploring different sets of incentive mechanisms, which can be based on visibility and social or professional status, social impact, meaningfulness, or fun. The understanding of these principles and the development of the mechanisms behind the engagement of large user bases is an important issue for amplifying data curation efforts.
126.96.36.199 Economic Models
Emerging economic models can provide the financial basis to support the generation and maintenance of high-quality data and the associated data curation infrastructures.
Pre-competitive Partnerships for Data Curation
A pre-competitive collaboration scheme is one economic model in which a consortium of organizations, which are typically competitors, collaborate in parts of the Research & Development (R&D) process which does not impact on their commercial competitive advantage. This allows partners to share the costs and risks associated with parts of the R&D process. One case of this model is the Pistoia Alliance (Barnes et al. 2009), which is a precompetitive alliance of life science companies, vendors, publishers, and academic groups that aims to lower barriers to innovation by improving the interoperability of R&D business processes. The Pistoia Alliance was founded by pharmaceutical companies such as AstraZeneca, GSK, Pfizer, and Novartis, and examples of shared resources include data and data infrastructure tools.
Public-Private Data Partnerships for Curation
Another emerging economic model for data curation are public–private partnerships (PPP), in which private companies and the public sector collaborate towards a mutual benefit partnership. In a PPP the risks, costs, and benefits are shared among the partners, which have non-competing, complementary interests over the data. Geospatial data and its high impact for both the public (environmental, administration) and private (natural resources companies) sectors is one of the early cases of PPPs. GeoConnections Canada is an example of a PPP initiative launched in 1999, with the objective of developing the Canadian Geospatial Data Infrastructure (CGDI) and publishing geospatial information on the web (Harper 2012; Data Curation Interview: Joe Sewash 2014). GeoConnections has been developed on a collaborative model involving the participation of federal, provincial, and territorial agencies, and the private and academic sectors.
Quantification of the Economic Impact of Data
The development of approaches to quantify the economic impact, value creation, and associated costs behind data resources is a fundamental element for justifying private and public investments in data infrastructures. One exemplar case of value quantification is the JISC study “Data centres: their use, value and impact” (Technopolis Group 2011), which provides a quantitative account of the value creation process of eight data centres. The creation of quantitative financial measures can provide the required evidence to support data infrastructure investments both public and private, creating sustainable business models grounded on data assets, expanding the existing data economy.
188.8.131.52 Curation at Scale
Human Computation and Crowdsourcing Services
Crowdsourcing platforms are rapidly evolving but there is still a major opportunity for market differentiation and growth. CrowdFlower, for example, is evolving in the direction of providing better APIs, supporting better integration with external systems.
Within crowdsourcing platforms, people show variability in the quality of work they produce, as well as the amount of time they take for the same work. Additionally, the accuracy and latency of human processors is not uniform over time. Therefore, appropriate methods are required to route tasks to the right person at the right time (Hassan et al. 2012). Furthermore combining work by different people on the same task might also help in improving the quality of work (Law and von Ahn 2009). Recruitment of suitable humans for computation is a major challenge of human computation.
Today, these platforms are mostly restricted to tasks that can be delegated to a paid generic audience. Possible future differentiation avenues include: (1) support for highly specialized domain experts, (2) more flexibility in the selection of demographic profiles, (3) creation of longer term (more persistent) relationships with teams of workers, (4) creation of a major general purpose open crowdsourcing service platform for voluntary work, and (5) using historical data to provide more productivity and automation for data curators (Kittur et al. 2007).
Instrumenting Popular Applications for Data Curation
In most cases data curation is performed with common office applications: regular spreadsheets, text editors, and email (Data Curation Interview: James Cheney 2014). These tools are an intrinsic part of existing data curation infrastructures and users are familiarized with them. These tools, however, lack some of the functionalities which are fundamental for data curation: (1) capture and representation of user actions; (2) annotation mechanisms/vocabulary reuse; (3) ability to handle large-scale data; (4) better search capabilities; and (5) integration with multiple data sources.
Extending applications with large user bases for data curation provides an opportunity for a low barrier penetration of data curation functionalities into more ad hoc data curation infrastructures. This allows wiring fundamental data curation processes into existing routine activities without a major disruption of the user working process (Data Curation Interview: Carole Goble 2014).
General-Purpose Data Curation Pipelines
While the adaptation and instrumentation of regular tools can provide a low-cost generic data curation solution, many projects will demand the use of tools designed from the start to support more sophisticated data curation activities. The development of general-purpose data curation frameworks that integrate core data curation functionalities into a large-scale data curation platform is a fundamental element for organizations that do large-scale data curation. Platforms such as Open Refine4 and Karma (Gil et al. 2011) provide examples of emerging data curation frameworks, with a focus on data transformation and integration. Differently from Extract Transform Load (ETL) frameworks, data curation platforms provide a better support for ad hoc, dynamic, manual, less frequent (long tail), and less scripted data transformations and integration. ETL pipelines can be seen as concentrating recurrent activities that become more formalized into a scripted process. General-purpose data curation platforms should target domain experts, trying to provide tools that are usable for people outside the computer science/information technology background.
Another major direction for reducing the cost of data curation is related to the automation of data curation activities. Algorithms are becoming more intelligent with advances in machine learning and artificial intelligence. It is expected that machine intelligence will be able to validate, repair, and annotate data within seconds, which might take hours for humans to perform (Kong et al. 2011). In effect, humans will be involved as required, e.g. for defining curation rules, validating hard instances, or providing data for training algorithms (Hassan et al. 2012).
The simplest form of automation consists of scripting curation activities that are recurrent, creating specialized curation agents. This approach is used, for example, in Wikipedia (Wiki Bots) for article cleaning and detecting vandalism. Another automation process consists of providing an algorithmic approach for the validation or annotation of the data against reference standards (Data Curation Interview: Antony Williams 2014). This would contribute to a “likesonomy” where both humans and algorithms could provide further evidence in favour or against data (Data Curation Interview: Antony Williams 2014). These approaches provide a way to automate more recurrent parts of the curation tasks and can be implemented today in any curation pipeline (there are no major technological barriers). However, the construction of these algorithmic or reference bases has a high cost effort (in terms of time consumption and expertise), since they depend on an explicit formalization of the algorithm or the reference criteria (rules).
Data Curation Automation
Curating by Demonstration (CbD)/Induction of Data Curation Workflows: Programming by example [or programming by demonstration (PbD)] (Cypher 1993; Flener and Schmid 2008; Lieberman 2001) is a set of end user development approaches in which user actions on concrete instances are generalized into a program. PbD can be used to allow distribution and amplification of the system development tasks by allowing users to become programmers. Despite being a traditional research area, and with research on PbD data integration (Tuchinda et al. 2007, 2011), PbD methods have not been extensively applied into data curation systems.
Evidence-based Measurement Models of Uncertainty over Data: The quantification and estimation of generic and domain-specific models of uncertainty from distributed and heterogeneous evidence bases can provide the basis for the decision on what should be delegated or validated by humans and what can be delegated to algorithmic approaches. IBM Watson is an example of a system that uses at its centre a statistical model to determine the probability of an answer being correct (Ferrucci et al. 2010). Uncertainty models can also be used to route tasks according to the level of expertise, minimizing the cost and maximizing the quality of data curation.
184.108.40.206 Human–Data Interaction
Interactivity and Ease of Curation Actions
Data interaction approaches that facilitate data transformation and access are fundamental for expanding the spectrum of data curators’ profiles. There are still major barriers for interacting with structured data and the process of querying, analysing, and modifying data inside databases is in most cases mediated by IT professionals or domain-specific applications. Supporting domain experts and casual users in querying, navigating, analysing, and transforming structured data is a fundamental functionality in data curation platforms.
Data-Driven Documents5(D3.js): D3.js is library for displaying interactive graphs in web documents. This library adheres to open web standard such as HTML5, SVG, and CSS, to enable powerful visualizations with open source licensing.
Tableau6: This software allows users to visualize multiple dimensions of relational databases. Furthermore it enables visualization of unstructured data through third-party adapters. Tableau has received a lot of attention due to its ease of use and free access public plan.
Open Refine7: This open source application allows users to clean and transform data from a variety of formats such as CSV, XML, RDF, JSON, etc. Open Refine is particularly useful for finding outliers in data and checking the distribution of values in columns through facets. It allows data reconciliation with external data sources such as Freebase and OpenCorporates.8
Structured query languages such as SQL are the default approach for interacting with databases, together with graphical user interfaces that are developed as a façade over structured query languages. The query language syntax and the need to understand the schema of the database are not appropriate for domain experts to interact and explore the data. Querying progressively more complex structured databases and dataspaces will demand different approaches suitable for different tasks and different levels of expertise (Franklin et al. 2005). New approaches for interacting with structured data have evolved from the early research stage and can provide the basis for new suites of tools that can facilitate the interaction between user and data. Examples are keyword search, visual query interfaces, and natural language query interfaces over databases (Franklin et al. 2005; Freitas et al. 2012a, b; Kaufmann and Bernstein 2007). Flexible approaches for database querying depend on the ability of the approach to interpret the user query intent, matching it with the elements in the database. These approaches are ultimately dependent on the creation of semantic models that support semantic approximation (Freitas et al. 2011). Despite going beyond the proof-of-concept stage, these functionalities and approaches have not migrated to commercial-level applications.
As data reuse grows, the consumer of third-party data needs to have mechanisms in place to verify the trustworthiness and the quality of the data. Some of the data quality attributes can be evident by the data itself, while others depend on an understanding of the broader context behind the data, i.e. the provenance of the data, the processes, artefacts, and actors behind the data creation.
Capturing and representing the context in which the data was generated and transformed and making it available for data consumers is a major requirement for data curation for datasets targeted towards third-party consumers. Provenance standards such as W3C PROV9 provide the grounding for the interoperable representation of the data. However, data curation applications still need to be instrumented to capture provenance. Provenance can be used to explicitly capture and represent the curation decisions that are made (Data Curation Interview: Paul Groth 2014). However, there is still a relatively low adoption on provenance capture and management in data applications. Additionally, manually evaluating trust and quality from provenance data can be a time-consuming process. The representation of provenance needs to be complemented by automated approaches to derive trust and assess data quality from provenance metadata, under the context of a specific application.
Fine-Grained Permission Management Models and Tools
Allowing large groups of users to collaborate demands the creation of fine-grained permission/rights associated with curation roles. Most systems today have a coarse-grained permission system, where system stewards oversee general contributors. While this mechanism can fully address the requirements of some projects, there is a clear demand for more fine-grained permission systems, where permissions can be defined at a data item level (Qin and Atluri 2003; Ryutov et al. 2009) and can be assigned in a distributed way. In order to support this fine-grained control, the investigation and development of automated methods for permissions inference and propagation (Kirrane et al. 2013), as well as low-effort distributed permission assignment mechanisms, is of primary importance. Analogously, similar methods can be applied to a fine-grained control of digital rights (Rodrıguez-Doncel et al. 2013).
220.127.116.11 Standardization and Interoperability
Standardized Data Model and Vocabularies for Data Reuse
A large part of the data curation effort consists of integrating and repurposing data created under different contexts. In many cases this integration can involve hundreds of data sources. Data model standards such as the Resource Description Framework (RDF)10 facilitate data integration at the data model level. The use of Universal Resource Identifiers (URIs) in the identification of data entities works as a web-scale open foreign key, which promotes the reuse of identifiers across different datasets, facilitating a distributed data integration process.
The creation of terminologies and vocabularies is a critical methodological step in a data curation project. Projects such as the New York Times (NYT) Index (Curry et al. 2010) or the Protein Data Bank (PDB) (Bernstein et al. 1977) prioritize the creation and evolution of a vocabulary that can serve to represent and annotate the data domain. In the case of PDB, the vocabulary expresses the representation needs of a community. The use of shared vocabularies is part of the vision of the linked data web (Berners-Lee 2009) and it is one methodological tool that can be used to facilitate semantic interoperability. While the creation of a vocabulary is more related to a methodological dimension, semantic search, schema mapping, or ontology alignment approaches (Shvaiko and Euzenat 2005; Freitas et al. 2012a, b) are central for reducing the burden of manual vocabulary mapping on the end user side, reducing the burden for terminological reuse (Freitas et al. 2012a, b).
Improved Integration and Communication between Curation Tools
Data is created and curated in different contexts and using different tools (which are specialized to satisfy different data curation needs). For example, a user may analyse possible data inconsistencies with a visualization tool, do schema mapping with a different tool, and then correct the data using a crowdsourcing platform. The ability to move the data seamlessly between different tools and capture user curation decisions and data transformations across different platforms is fundamental to support more sophisticated data curation operations that may demand highly specialized tools to make the final result trustworthy (Data Curation Interview: Paul Groth 2014; Data Curation Interview: James Cheney 2014). The creation of standardized data models and vocabularies (such as W3C PROV) addresses part of the problem. However, data curation applications need to be adapted to capture and manage provenance and to provide better adoption over existing standards.
18.104.22.168 Data Curation Models
Minimum Information Models for Data Curation
Despite recent efforts in the recognition and understanding behind the field of data curation (Palmer et al. 2013; Lord et al. 2004), the processes behind it still need to be better formalized. The adoption of methods such as minimum information models (La Novere et al. 2005) and their materialization in tools is one example of methodological improvement that can provide a minimum quality standard for data curators. In eScience, MIRIAM (minimum information required in the annotation of models) (Laibe and Le Novère 2007) is an example of a community-level effort to standardize the annotation and curation processes of quantitative models of biological systems.
Curating Nanopublications, Coping with the Long Tail of Science
With the increase in the amount of scholarly communication, it is increasingly difficult to find, connect, and curate scientific statements (Mons and Velterop 2009; Groth et al. 2010). Nanopublications are core scientific statements with associated contexts (Groth et al. 2010), which aim at providing a synthetic mechanism for scientific communication. Nanopublications are still an emerging paradigm, which may provide a way for the distributed creation of semi-structured data in both scientific and non-scientific domains.
Investigation of Theoretical Principles and Domain-Specific Models
Models for data curation should evolve from the ground practice into a more abstract description. The advancement of automated data curation algorithms will depend on the definition of theoretical models and on the investigation of the principles behind data curation (Buneman et al. 2008). Understanding the causal mechanisms behind workflows (Cheney 2010) and the generalization conditions behind data transportability (Pearl and Bareinboim 2011) are examples of theoretical models that can impact data curation, guiding users towards the generation and representation of data that can be reused in broader contexts.
22.214.171.124 Unstructured and Structured Data Integration
Entity Recognition and Linking
Most of the information on the web and in organizations is available as unstructured data (text, videos, etc.). The process of making sense of information available as unstructured data is time-consuming: differently from structured data, unstructured data cannot be directly compared, aggregated, and operated. At the same time, unstructured data holds most of the information of the long tail of data variety (Fig. 6.2).
Extracting structured information from unstructured data is a fundamental step for making the long tail of data analysable and interpretable. Part of the problem can be addressed by information extraction approaches (e.g. relation extraction, entity recognition, and ontology extraction) (Freitas et al. 2012a, b; Schutz and Buitelaar 2005; Han et al. 2011; Data Curation Interview: Helen Lippell 2014). These tools extract information from text and can be used to automatically build semi-structured knowledge from text. There are information extraction frameworks that are mature to certain classes of information extraction problems, but their adoption remains limited to early adopters (Curry et al. 2010; Data Curation Interview: Helen Lippell 2014).
Use of Open Data to Integrate Structured and Unstructured Data
Another recent shift in this area is the availability of large-scale structured data resources, in particular open data, which is supporting information extraction. For example, entities in open datasets such as DBpedia (Auer et al. 2007) and Freebase (Bollacker et al. 2008) can be used to identify named entities (people, places, and organizations) in texts, which can be used to categorize and organize text contents. Open data in this scenario works as a common-sense knowledge base for entities and can be extended with domain-specific entities inside organizational environments. Named entity recognition and linking tools such as DBpedia Spotlight (Mendes et al. 2011) can be used to link structured and unstructured data.
Complementarily, unstructured data can be used to provide a more comprehensive description for structured data, improving content accessibility and semantics. Distributional semantic models, semantic models that are built from large-scale collections (Freitas et al. 2012a, b), can be applied to structured databases (Freitas and Curry 2014) and are examples of approaches that can be used to enrich the semantics of the data.
Natural Language Processing Pipelines
The Natural Language Processing (NLP) community has mature approaches and tools that can be directly applied to projects that deal with unstructured data. Open source projects such as Apache UIMA11 facilitate the integration of NLP functionalities into other systems. Additionally, strong industry use cases such as IBM Watson (Ferrucci et al. 2010), Thomson Reuters, The New York Times (Curry et al. 2010), and the Press Association (Data Curation Interview: Hellen Lippell) are shifting the perception of NLP techniques from the academic to the industrial field.
6.7 Sectors Case Studies for Big Data Curation
In this section, case studies are discussed that cover different data curation processes over different domains. The purpose behind the case studies is to capture the different workflows that have been adopted or designed in order to deal with data curation in the big data context.
6.7.1 Health and Life Sciences
ChemSpider12 is a search engine that provides free access to the structure-centric chemical community. It has been designed to aggregate and index chemical structures and their associated information into a single searchable repository. ChemSpider contains tens of millions of chemical compounds with associated data and is serving as a data provider to websites and software tools. Available since 2007, ChemSpider has collated over 300 data sources from chemical vendors, government databases, private laboratories, and individuals. Used by chemists for identifier conversion and predictions, ChemSpider datasets are also heavily leveraged by chemical vendors and pharmaceutical companies as pre-competitive resources for experimental and clinical trial investigation.
Post comments on a record in order to highlight the need for appropriate action by a master curator.
As a registered member with curation rights, directly curate the data or remove erroneous data.
ChemSpider adopts a meritocratic model for their curation activities. Normal curators are responsible for deposition, which is checked, and verified by master curators. Normal curators in turn can be invited to become masters after some qualifying period of contribution. The platform has a blended human and computer-based curation process. Robotic curation uses algorithms for error correction and data validation at deposition time.
ChemSpider uses a mixture of computational approaches to perform certain levels of data validation. They have built their own chemical data validation tool, which is called CVSP (chemical validation and standardization platform). CVSP helps chemists to check chemicals to determine whether or not they are validly represented, or if there are any data quality issues so that they can flag those quality issues easily and efficiently.
Using the open community model, ChemSpider distributes its curation activity across its community using crowdsourcing to accommodate massive growth rates and quality issues. They use a wiki-like approach for people to interact with the data, so that they can annotate it, validate it, curate it, flag it, and delete it. ChemSpider is in the process of implementing an automated recognition system that will measure the contribution effort of curators through the data validation and engagement process. The contribution metrics can be publicly viewable and accessible through a central profile for the data curator.
126.96.36.199 Protein Data Bank
The Research Collaboratory for Structural Bioinformatics Protein Data Bank13 (RCSB PDB) is a group dedicated to improve the understanding of the functions of biological systems through the study of 3D structure of biological macromolecules. The PDB has had over 300 million dataset downloads.
A significant amount of the curation process at PDB consists of providing standardized vocabulary for describing the relationships between biological entities, varying from organ tissue to the description of the molecular structure. The use of standardized vocabularies helps with the nomenclature used to describe protein and small molecule names and their descriptors present in the structure entry. The data curation process covers the identification and correction of inconsistencies over the 3D protein structure and experimental data. In order to implement a global hierarchical governance approach to the data curation workflow, PDB staff review and annotate each submitted entry before robotic curation checks for plausibility as part of the data deposition, processing, and distribution. The data curation effort is distributed across their sister sites.
Robotic curation automates the data validation and verification. Human curators contribute to the definition of rules for the detection of inconsistencies. The curation process is also propagated retrospectively, where errors found in the data are corrected retrospectively to the archives. Up-to-date versions of the datasets are released on a weekly basis to keep all sources consistent with the current standards and to ensure good data curation quality.
Foldit (Good and Su 2011) is a popular example of a human computation applied to a complex problem, i.e. finding patterns of protein folding. The developers of Foldit have used gamification to enable human computation. Through these games people can predict protein structure that might help in targeting drugs at particular disease. Current computer algorithms are unable to deal with the exponentially high number of possible protein structures. To overcome this problem, Foldit uses competitive protein folding to generate the best proteins (Eiben et al. 2012).
6.7.2 Media and Entertainment
188.8.131.52 Press Association
Press Association (PA) is the national news agency for the UK and Ireland and a leading multimedia content provider across web, mobile, broadcast, and print. For the last 145 years, PA has been providing feeds (text, data, photos, and videos) to major UK media outlets as well as corporate customers and the public sector.
The data curation process starts with an article submitted to a platform which uses a set of linguistic extraction rules over unstructured text to automatically derive tags for the article, enriching it with machine readable structured data. A data curator then selects the terms that better describe the contents and inserts new tags if necessary. The tags enrich the original text with the general category of the analysed contents, while also providing a description of specific entities (places, people, events, facts) that are present in the text. The metadata manager then reviews the classification and the content is published online.
184.108.40.206 The New York Times
The New York Times (NYT) is the largest metropolitan and the third largest newspaper in the United States. The company has a long history of the curation of its articles in its 100-year-old curated repository (NYT Index).
Taxonomy managers review the classification and the content is published online, providing continuous feedback into the classification process. In a later stage, the article receives a second level curation by the index department, which appends additional tags and a summary of the article to the stored resource.
eBay is one of the most popular online marketplaces that caters for millions of products and customers. eBay has employed human computation to solve two important issues of data quality: managing product taxonomies and finding identifiers in product descriptions. Crowdsourced workers help eBay in improving the speed and quality of product classification algorithms at lower costs.
Unilever is one of the world’s largest manufacturers of consumer goods, with global operations. Unilever utilized crowdsourced human computation within their marketing strategy for new products. Human computation was used to gather sufficient data about customer feedback and to analyse public sentiment of social media. Initially Unilever developed a set of machine-learning algorithms to conduct an analysis sentiment of customers across their product range. However, these sentiment analysis algorithms were unable to account for regional and cultural differences between target populations. Therefore, Unilever effectively improved the accuracy of sentiment analysis algorithms with crowdsourcing, by verifying the output algorithms and gathering feedback from an online crowdsourcing platform, i.e. Crowdflower.
With the growth in the number of data sources and of decentralized content generation, ensuring data quality becomes a fundamental issue for data management environments in the big data era. The evolution of data curation methods and tools is a cornerstone element for ensuring data quality at the scale of big data.
Based on the evidence collected by an extensive investigation that included a comprehensive literature analysis, survey, interviews with data curation experts, questionnaires, and case studies, the future requirements and emerging trends for data curation were identified. The analysis can provide to data curators, technical managers, and researchers an up-to-date view of the challenges, approaches, and opportunities for data curation in the big data era.
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