A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis

  • Osvaldo Graña
  • Miriam Rubio-Camarillo
  • Florentino Fdez-Riverola
  • David G. Pisano
  • Daniel Glez-Peña
Conference paper
Part of the Advances in Intelligent Systems and Computing book series (AISC, volume 375)

Abstract

Many bioinformatic programs have been developed to analyze data from RNA-seq experiments. These programs are widely used and often included in computational pipelines. Nevertheless, there does not seem to be a precise definition of what constitutes a proper workflow for this kind of data. We present here a new workflow that takes into account the most common requirements for RNA-seq analysis, and that is implemented as an automatic pipeline to perform an efficient and complete evaluation.

Keywords

RNA-seq NGS Pipeline Transcriptomics 

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Copyright information

© Springer International Publishing Switzerland 2015

Authors and Affiliations

  • Osvaldo Graña
    • 1
  • Miriam Rubio-Camarillo
    • 2
  • Florentino Fdez-Riverola
    • 3
  • David G. Pisano
    • 1
  • Daniel Glez-Peña
    • 3
  1. 1.Bioinformatics Unit, Structural Biology and BioComputing ProgrammeSpanish National Cancer Research Centre (CNIO)MadridSpain
  2. 2.Structural Computational Biology Group, Structural Biology and BioComputing ProgrammeSpanish National Cancer Research Centre (CNIO)MadridSpain
  3. 3.ESEI - Escuela Superior de Ingeniería Informática Edificio PolitécnicoCampus Universitario as Lagoas S/N Universidad de VigoOurenseSpain

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