Skip to main content

Generation of MR-Based Attenuation Correction Map of PET Images in the Brain Employing Joint Segmentation of Skull and Soft-Tissue from Single Short-TE MR Imaging Modality

  • Chapter
  • First Online:
Computational Methods for Molecular Imaging

Abstract

Recently introduced PET/MRI scanners present significant advantages in comparison with PET/CT, including better soft-tissue contrast, lower radiation dose, and truly simultaneous imaging capabilities. However, the lack of an accurate method for generation of MR-based attenuation map (\(\upmu \)-map) at 511 keV is hampering further development and wider acceptance of this technology. Here, we present a new method for the MR-based attenuation correction map (\(\upmu \)-map), employing a proposed short echo-time (STE) MR imaging technique along with the nearly automatic segmentation. This method repeatedly applies active contours inhomogeneity correction, multi-class spatial fuzzy clustering (SFCM), followed by shape analysis, to classify the images into cortical bone, air, and soft tissue classes. The proposed segmentation method returned sensitivity of 81 % for cortical bone and above 90 % for soft tissue and air. These results suggest that this technique is accurate, efficient, and robust for discriminating bony structures from the neighboring air and soft tissue in STE-MR images, which is suitable for generating MR-based \(\upmu \)-maps.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Navalpakkam, B.K., Braun, H., Kuwert, T., Quick, H.H.: Magnetic resonance—based attenuation correction for PET/MR hybrid imaging using continuous valued attenuation maps. Invest. Radiol. 48(5), 323–332 (2013)

    Article  Google Scholar 

  2. Zaidi, H., Del Guerra, A.: An outlook on future design of hybrid PET/MRI systems. Int. J. Med. Phys. Res. Pract. 38(10), 5667–5689 (2011)

    Google Scholar 

  3. Catana, C., et al.: Toward implementing an MRI-based PET attenuation-correction method for neurologic studies on the MR-PET brain prototype. J. Nucl. Med. 51(9), 1431–1438 (2010)

    Article  Google Scholar 

  4. Khateri, P., et al.: Generation of attenuation map for MR-based attenuation correction of PET data in the head area employing 3D short echo time MR imaging. Nucl. Instrum. Methods Phys. Res. Sect. A: Accel. Spectrom. Detect. Assoc. Equip. 702, 133–136 (2013)

    Article  Google Scholar 

  5. Khateri, P., et al.: A novel segmentation approach for implementation of MRAC in head PET/MRI employing short-TE MRI and 2-point Dixon method in a fuzzy C-means framework. Nucl. Instrum. Methods Phys. Res. Sect. A: Accel. Spectrom. Detect. Assoc. Equip. 734, 171–174 (2014)

    Article  Google Scholar 

  6. Li, C., et al.: A level set method for image segmentation in the presence of intensity inhomogeneities with application to MRI. IEEE Trans. Image Process. 20(7), 2007–2016 (2011)

    Article  MathSciNet  Google Scholar 

  7. http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT

  8. Dogdas, B., Shattuck, D.W., Leahy, R.M.: Segmentation of skull and scalp in 3-D human MRI using mathematical morphology. Hum. Brain Mapp. 26(4), 273–285 (2005)

    Article  Google Scholar 

  9. Wang, D., Shi, L., Chu, W.C., Cheng, J.C., Heng, P.A.: Segmentation of human skull in MRI using statistical shape information from CT data. J. Magn. Reson. Imaging 30(3), 490–498 (2009)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hamidreza Saligheh Rad .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer International Publishing Switzerland

About this chapter

Cite this chapter

Kazerooni, A.F., A’arabi, M.H., Ay, M., Saligheh Rad, H. (2015). Generation of MR-Based Attenuation Correction Map of PET Images in the Brain Employing Joint Segmentation of Skull and Soft-Tissue from Single Short-TE MR Imaging Modality. In: Gao, F., Shi, K., Li, S. (eds) Computational Methods for Molecular Imaging. Lecture Notes in Computational Vision and Biomechanics, vol 22. Springer, Cham. https://doi.org/10.1007/978-3-319-18431-9_14

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-18431-9_14

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-18430-2

  • Online ISBN: 978-3-319-18431-9

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics