Genome-Wide Identification of Non-coding RNAs in Komagatella pastoris str. GS115

  • Hugo Schneider
  • Sebastian Bartschat
  • Gero Doose
  • Lucas Maciel
  • Erick Pizani
  • Marcelo Bassani
  • Fernando Araripe Torres
  • Sebastian Will
  • Tainá Raiol
  • Marcelo Brígido
  • Maria Emília Walter
  • Peter Stadler
Part of the Lecture Notes in Computer Science book series (LNCS, volume 8826)

Abstract

The methylotrophic yeast Komagatella pastoris is a relevant bioengineering platform for protein synthesis. Even though non-coding RNAs are well known to be key players in the control of gene expression no comprehensive annotation of non-coding RNAs has been reported for this species. We combine here published RNA-seq data with a wide array of homology based annotation tools and de novo gene predictions to compile the non-coding RNAs in K. pastoris.

Keywords

Non-coding RNA Transcriptome Komagatella pastoris Pichia pastoris snoRNA long ncRNA 

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Copyright information

© Springer International Publishing Switzerland 2014

Authors and Affiliations

  • Hugo Schneider
    • 1
  • Sebastian Bartschat
    • 2
  • Gero Doose
    • 2
  • Lucas Maciel
    • 1
  • Erick Pizani
    • 1
  • Marcelo Bassani
    • 1
  • Fernando Araripe Torres
    • 3
  • Sebastian Will
    • 2
  • Tainá Raiol
    • 3
  • Marcelo Brígido
    • 3
  • Maria Emília Walter
    • 1
  • Peter Stadler
    • 2
    • 3
    • 4
    • 5
    • 6
    • 7
    • 8
  1. 1.Department of Computer Science, Institute of Exact SciencesUniversity of BrasíliaBrasíliaBrazil
  2. 2.Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for BioinformaticsUniversity of LeipzigLeipzigGermany
  3. 3.Department of Cellular Biology, Institute of BiologyUniversity of BrasíliaBrasíliaBrazil
  4. 4.Max Planck Institute for Mathematics in the SciencesLeipzigGermany
  5. 5.Fraunhofer Institut für Zelltherapie und ImmunologieLeipzigGermany
  6. 6.Institute for Theoretical ChemistryUniversity of ViennaWienAustria
  7. 7.Center for non-coding RNA in Technology and HealthUniversity of CopenhagenFrederiksberg CDenmark
  8. 8.Santa Fe InstituteSanta FeUSA

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