Multiplex DNA Biosensor for Viral Infection Diagnosis Using SERS Molecular Sentinel-on-Chip

  • Hoan T. Ngo
  • Hsin-Neng Wang
  • Thomas Burke
  • Christopher Woods
  • Geoffrey S. Ginsburg
  • Tuan Vo-Dinh
Part of the IFMBE Proceedings book series (IFMBE, volume 46)

Abstract

The development of sensitive and selective techniques for multiplex detection of DNA biomarkers is paramount for clinical diagnosis. Various multiplex DNA detection techniques have been reported. However, most of these techniques require multiple incubation and/or washing steps or target sequence labeling. In this work, we demonstrated a unique multiplex DNA biosensor for viral infection diagnosis using the surface-enhanced Raman scattering (SERS) “Molecular Sentinel-on-Chip” (MSC) technique. The sensing mechanism is based upon the change of SERS intensity when Raman labels tagged at 3′-ends of molecular sentinel nanoprobes are physically displaced from the Nanowave chip’s surface upon target DNA hybridization. SERS measurements were performed immediately following a single hybridization reaction between the target single-stranded DNA (ssDNA) sequences and the complementary molecular sentinel nanoprobes immobilized on the Nanowave chip without requiring target labeling (i.e., label-free assay), secondary hybridization, or post-hybridization washing, thus reducing the assay time and lowering cost. Two nucleic acid transcripts, interferon alpha-inducible protein 27 (IFI27) and interferon-induced protein 44-like (IFI44L), are used as model systems for the multiplex detection concept demonstration. These two genes are well known for their critical role in host immune response to viral infections and can be used as molecular signature for viral infection diagnosis. The results indicate the effectiveness and potential of the MSC technology for multiplex DNA detection for point-of-care diagnostics and global health applications.

Keywords

Multiplex DNA detection DNA biosensor Surface- enhanced Raman scattering SERS Molecular Sentinelon- Chip Nanowave Metal film over nanosphere Infectious disease Global health 

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Copyright information

© Springer International Publishing Switzerland 2015

Authors and Affiliations

  • Hoan T. Ngo
    • 1
    • 2
  • Hsin-Neng Wang
    • 1
    • 2
  • Thomas Burke
    • 3
  • Christopher Woods
    • 4
  • Geoffrey S. Ginsburg
    • 2
    • 3
  • Tuan Vo-Dinh
    • 1
    • 2
  1. 1.Departments of Biomedical Engineering and ChemistryDuke UniversityDurhamUSA
  2. 2.Fitzpatrick Institute for PhotonicsDuke UniversityDurhamUSA
  3. 3.Duke Institute for Genome Sciences & PolicyDuke UniversityDurhamUSA
  4. 4.Duke Global Health InstituteDuke UniversityDurhamUSA

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