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A Nanopublishing Architecture for Biomedical Data

  • Pedro Sernadela
  • Eelke van der Horst
  • Mark Thompson
  • Pedro Lopes
  • Marco Roos
  • José Luís Oliveira
Part of the Advances in Intelligent Systems and Computing book series (AISC, volume 294)

Abstract

The massive production of data in the biomedical domain soon triggered a phenomenon known as information overload. The majority of these data are redundant without linked statements or associations, which hinders research methods. In this work, we describe an innovative and automated approach to integrate scientific results into small RDF-based data snippets called nanopublications. A nanopublication enhances attribution and ownership of specific data elements, representing the smallest unit of publishable information. It is particularly relevant for the scientific domain, where controlled publication, validation and ownership of data are essential. This proposal extends an existing semantic data integration framework by enabling the generation of nanopublications. Furthermore, we explore a streamlined integration and retrieval pipeline, empowered by current Semantic Web standards.

Keywords

Nanopublications COEUS Semantic Web Data Integration 

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Copyright information

© Springer International Publishing Switzerland 2014

Authors and Affiliations

  • Pedro Sernadela
    • 1
  • Eelke van der Horst
    • 2
  • Mark Thompson
    • 2
  • Pedro Lopes
    • 1
  • Marco Roos
    • 2
  • José Luís Oliveira
    • 1
  1. 1.DETI/IEETAUniversity of AveiroAveiroPortugal
  2. 2.Human Genetics DepartmentLeiden University Medical CenterLeidenThe Netherlands

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