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Rebasing I/O for Scientific Computing: Leveraging Storage Class Memory in an IBM BlueGene/Q Supercomputer

  • Felix Schürmann
  • Fabien Delalondre
  • Pramod S. Kumbhar
  • John Biddiscombe
  • Miguel Gila
  • Davide Tacchella
  • Alessandro Curioni
  • Bernard Metzler
  • Peter Morjan
  • Joachim Fenkes
  • Michele M. Franceschini
  • Robert S. Germain
  • Lars Schneidenbach
  • T. J. Christopher Ward
  • Blake G. Fitch
Part of the Lecture Notes in Computer Science book series (LNCS, volume 8488)

Abstract

Storage class memory is receiving increasing attention for use in HPC systems for the acceleration of intensive IO operations. We report a particular instance using SLC FLASH memory integrated with an IBM BlueGene/Q supercomputer at scale (Blue Gene Active Storage, BGAS). We describe two principle modes of operation of the non-volatile memory: 1) block device; 2) direct storage access (DSA). The block device layer, built on the DSA layer, provides compatibility with IO layers common to existing HPC IO systems (POSIX, MPIO, HDF5) and is expected to provide high performance in bandwidth critical use cases. The novel DSA strategy enables a low-overhead, byte addressable, asynchronous, kernel by-pass access method for very high user space IOPs in multithreaded application environments. Here, we expose DSA through HDF5 using a custom file driver. Benchmark results for the different modes are presented and scale-out to full system size showcases the capabilities of this technology.

Keywords

data-intensive supercomputing IO storage class memory IOPS verbs 

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Copyright information

© Springer International Publishing Switzerland 2014

Authors and Affiliations

  • Felix Schürmann
    • 1
  • Fabien Delalondre
    • 1
  • Pramod S. Kumbhar
    • 1
  • John Biddiscombe
    • 2
  • Miguel Gila
    • 2
  • Davide Tacchella
    • 2
  • Alessandro Curioni
    • 3
  • Bernard Metzler
    • 3
  • Peter Morjan
    • 4
  • Joachim Fenkes
    • 4
  • Michele M. Franceschini
    • 5
  • Robert S. Germain
    • 5
  • Lars Schneidenbach
    • 5
  • T. J. Christopher Ward
    • 6
  • Blake G. Fitch
    • 5
  1. 1.Blue Brain Project, Brain Mind InstituteÉcole Polytechnique Fédérale de LausanneLausanneSwitzerland
  2. 2.CSCS, Swiss National Supercomputing CentreLuganoSwitzerland
  3. 3.IBM Research GmbHRueschlikonSwitzerland
  4. 4.IBM Deutschland Research & Development GmbHBöblingenGermany
  5. 5.IBM T.J. Watson Research CenterYorktown HeightsUSA
  6. 6.IBM Software GroupHursley ParkU.K.

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