Phosphorescent Oxygen-Sensitive Probes pp 29-69 | Cite as
O2 Analysis on a Fluorescence Spectrometer or Plate Reader
Abstract
In this chapter, the use of Pt-porphyrin-based extracellular and intracellular O2 sensing probes (ecO2 and icO2) on a TR-F plate reader format is described and critically assessed. The principles underpinning extracellular measurement are outlined and the assessment of biological oxygen consumption in prokaryotic cells, eukaryotic cells and small organisms is outlined along with a description of how such measurements can contribute to the development of a detailed picture of cell metabolism. The use of a mathematical model describing the distribution of local O2 gradients within biological samples is also described. Finally, the principles of icO2 sensing are discussed and some short case studies are provided for demonstrating the utility of icO2 probes for the monitoring of cellular function and metabolic perturbations and how such measurements can be allied to other bioenergetic markers to generate a more complete picture of metabolic status.
Keywords
Oxygen Respiration Cell-based assays Phosphorescent Probes Pt-porphyrins Time-Resolved Fluorescence Oxygen-Sensitive Probes ScreeningNotes
Acknowledgments
This work was supported by the Science Foundation Ireland, grant 07/IN.1/B1804, and the EU FP7 project Chebana MC-IAPP-2009-230641.
References
- 1.Hynes J, Floyd S, Soini AE, O’Connor R, Papkovsky DB (2003) Fluorescence-based cell viability screening assays using water-soluble oxygen probes. J Biomol Screen 8:264–272PubMedCrossRefGoogle Scholar
- 2.O’Riordan TC, Buckley D, Ogurtsov V, O’Connor R, Papkovsky DB (2000) A cell viability assay based on monitoring respiration by optical oxygen sensing. Anal Biochem 278:221–227PubMedCrossRefGoogle Scholar
- 3.Schouest K, Zitova A, Spillane C, Papkovsky D (2009) Toxicological assessment of chemicals using Caenorhabditis elegans and optical oxygen respirometry. Environ Toxicol Chem 28:791–799PubMedCrossRefGoogle Scholar
- 4.Zitova A, O’Mahony FC, Cross M, Davenport J, Papkovsky DB (2009) Toxicological profiling of chemical and environmental samples using panels of test organisms and optical oxygen respirometry. Environ Toxicol 24:116–127PubMedCrossRefGoogle Scholar
- 5.Alderman J, Hynes J, Floyd SM, Krüger J, O’Connor R, Papkovsky DB (2004) A low-volume platform for cell-respirometric screening based on quenched-luminescence oxygen sensing. Biosens Bioelectron 19:1529–1535PubMedCrossRefGoogle Scholar
- 6.Zitova A, Hynes J, Kollar J, Borisov SM, Klimant I, Papkovsky DB (2010) Analysis of activity and inhibition of oxygen-dependent enzymes by optical respirometry on the LightCycler system. Anal Biochem 397:144–151PubMedCrossRefGoogle Scholar
- 7.O’Donovan C, Twomey E, Alderman J, Moore T, Papkovsky D (2006) Development of a respirometric biochip for embryo assessment. Lab Chip 6:1438–1444PubMedCrossRefGoogle Scholar
- 8.Wilson DF (2008) Quantifying the role of oxygen pressure in tissue function. Am J Physiol Heart Circ Physiol 294:H11–H13PubMedCrossRefGoogle Scholar
- 9.O’Riordan TC, Fitzgerald K, Ponomarev GV, Mackrill J, Hynes J, Taylor C, Papkovsky DB (2007) Sensing intracellular oxygen using near-infrared phosphorescent probes and live-cell fluorescence imaging. Am J Physiol Regul Integr Comp Physiol 292:R1613–1620PubMedCrossRefGoogle Scholar
- 10.Fercher A, Borisov SM, Zhdanov AV, Klimant I, Papkovsky DB (2011) Intracellular O2 Sensing Probe Based on Cell-penetrating Phosphorescent Nanoparticles. ACS Nano 5:5499–5508PubMedCrossRefGoogle Scholar
- 11.O’Riordan TC, Zhdanov AV, Ponomarev GV, Papkovsky DB (2007) Analysis of intracellular oxygen and metabolic responses of mammalian cells by time-resolved fluorometry. Anal Chem 79:9414–9419PubMedCrossRefGoogle Scholar
- 12.Dmitriev RI, Papkovsky DB (2012) Optical probes and techniques for O(2) measurement in live cells and tissue. Cell Mol Life Sci [Epub ahead of print] Google Scholar
- 13.Dmitriev RI, Ropiak HM, Yashunsky DV, Ponomarev GV, Zhdanov AV, Papkovsky DB (2010) Bactenecin 7 peptide fragment as a tool for intracellular delivery of a phosphorescent oxygen sensor. FEBS J 277:4651–4661PubMedCrossRefGoogle Scholar
- 14.Dmitriev RI, Zhdanov AV, Ponomarev GV, Yashunski DV, Papkovsky DB (2010) Intracellular oxygen-sensitive phosphorescent probes based on cell-penetrating peptides. Anal Biochem 398:24–33PubMedCrossRefGoogle Scholar
- 15.Zhdanov AV, Dmitriev RI, Papkovsky DB (2011) Bafilomycin A1 activates respiration of neuronal cells via uncoupling associated with flickering depolarization of mitochondria. Cell Mol Life Sci 68:903–917PubMedCrossRefGoogle Scholar
- 16.Zhdanov AV, Ward MW, Prehn JH, Papkovsky DB (2008) Dynamics of intracellular oxygen in PC12 Cells upon stimulation of neurotransmission. J Biol Chem 283:5650–5661PubMedCrossRefGoogle Scholar
- 17.Zhdanov AV, Ward MW, Taylor CT, Souslova EA, Chudakov DM, Prehn JH, Papkovsky DB (2010) Extracellular calcium depletion transiently elevates oxygen consumption in neurosecretory PC12 cells through activation of mitochondrial Na(+)/Ca(2 +) exchange. Biochim Biophys Acta 1797:1627–1637PubMedCrossRefGoogle Scholar
- 18.Hynes J, O’Riordan TC, Zhdanov AV, Uray G, Will Y, Papkovsky DB (2009) In vitro analysis of cell metabolism using a long-decay pH-sensitive lanthanide probe and extracellular acidification assay. Anal Biochem 390:21–28PubMedCrossRefGoogle Scholar
- 19.Hynes J, Marroquin LD, Ogurtsov VI, Christiansen KN, Stevens GJ, Papkovsky DB, Will Y (2006) Investigation of drug-induced mitochondrial toxicity using fluorescence-based oxygen-sensitive probes. Toxicol Sci 92:186–200PubMedCrossRefGoogle Scholar
- 20.O’Mahony F, Green RA, Baylis C, Fernandes R, Papkovsky DB (2009) Analysis of total aerobic viable counts in samples of raw meat using fluorescence-based probe and oxygen consumption assay. Food Control 20:129–135CrossRefGoogle Scholar
- 21.Hynes J, Hill R, Papkovsky DB (2006) The use of a fluorescence-based oxygen uptake assay in the analysis of cytotoxicity. Toxicol in Vitro 20:785–792PubMedCrossRefGoogle Scholar
- 22.Will Y, Hynes J, Ogurtsov VI, Papkovsky DB (2007) Analysis of mitochondrial function using phosphorescent oxygen-sensitive probes. Nat. Protocols 1:2563–2572CrossRefGoogle Scholar
- 23.Yao J, Irwin R, Chen S, Hamilton R, Cadenas E, Brinton RD (2011) Ovarian hormone loss induces bioenergetic deficits and mitochondrial beta-amyloid. Neurobiol Aging 6(7):e21788Google Scholar
- 24.Hu L-F, Lu M, Tiong CX, Dawe GS, Hu G, Bian J-S (2010) Neuroprotective effects of hydrogen sulphide on Parkinson’s disease rat models. Aging Cell 9:135–146PubMedCrossRefGoogle Scholar
- 25.Chan DC (2006) Mitochondria: dynamic organelles in disease aging, and development. Cell 125:1241–1252PubMedCrossRefGoogle Scholar
- 26.Marroquin LD, Hynes J, Dykens JA, Jamieson JD, Will Y (2007) Circumventing the Crabtree effect: replacing media glucose with galactose increases susceptibility of HepG2 cells to mitochondrial toxicants. Toxicol Sci 97:539–547PubMedCrossRefGoogle Scholar
- 27.Kettenhofen R, Bohlen H (2008) Preclinical assessment of cardiac toxicity. Drug Discov Today 13:702–707PubMedCrossRefGoogle Scholar
- 28.Choubey V, Safiulina D, Vaarmann A, Cagalinec M, Wareski P, Kuum M, Zharkovsky A, Kaasik A (2011) Mutant A53T α-synuclein induces neuronal death by increasing mitochondrial autophagy. J Biol ChemGoogle Scholar
- 29.O’Hagan KA, Cocchiglia S, Zhdanov AV, Tambuwala MM, Cummins EP, Monfared M, Agbor TA, Garvey JF, Papkovsky DB, Taylor CT, Allan BB (2009) PGC-1alpha is coupled to HIF-1alpha-dependent gene expression by increasing mitochondrial oxygen consumption in skeletal muscle cells. Proc Natl Acad Sci U S A 106:2188–2193PubMedCrossRefGoogle Scholar
- 30.Favre C, Zhdanov A, Leahy M, Papkovsky D, O’Connor R (2010) Mitochondrial pyrimidine nucleotide carrier (PNC1) regulates mitochondrial biogenesis and the invasive phenotype of cancer cells. Oncogene 29:3964–3976PubMedCrossRefGoogle Scholar
- 31.Hynes J, Swiss RL, Will Y (2012) High-throughput analysis of mitochondrial oxygen consumption. Methods Mol Biol 810:59–72PubMedCrossRefGoogle Scholar
- 32.Sung HJ, Ma W, Wang PY, Hynes J, O’Riordan TC, Combs CA, McCoy JP Jr, Bunz F, Kang JG, Hwang PM (2010) Mitochondrial respiration protects against oxygen-associated DNA damage. Nat Commun 1:5PubMedCrossRefGoogle Scholar
- 33.Jonckheere AI, Huigsloot M, Janssen AJ, Kappen AJ, Smeitink JA, Rodenburg RJ (2010) High-throughput assay to measure oxygen consumption in digitonin-permeabilized cells of patients with mitochondrial disorders. Clin Chem 56:424–431PubMedCrossRefGoogle Scholar
- 34.Kelm JM, Lorber V, Snedeker JG, Schmidt D, Broggini-Tenzer A, Weisstanner M, Odermatt B, Mol A, Zünd G, Hoerstrup SP (2010) A novel concept for scaffold-free vessel tissue engineering: self-assembly of micro tissue building blocks. J Biotechnol 148:46–55PubMedCrossRefGoogle Scholar
- 35.Amacher DE (2005) Drug-associated mitochondrial toxicity and its detection. Curr Med Chem 12:1829–1839PubMedCrossRefGoogle Scholar
- 36.Lin MT, Beal MF (2006) Mitochondrial dysfunction and oxidative stress in neurodegenerative diseases. Nature 443:787–795PubMedCrossRefGoogle Scholar
- 37.Muller WE, Eckert A, Kurz C, Eckert GP, Leuner K (2011) Mitochondrial dysfunction: common final pathway in brain aging and Alzheimer’s disease–therapeutic aspects. Mol Neurobiol 41:159–171Google Scholar
- 38.Bartlett K, Eaton S (2004) Mitochondrial beta-oxidation. Eur J Biochem 271:462–469PubMedCrossRefGoogle Scholar
- 39.Tennant DA, Duran RV, Gottlieb E (2010) Targeting metabolic transformation for cancer therapy. Nat Rev Cancer 10:267–277PubMedCrossRefGoogle Scholar
- 40.Wise DR, DeBerardinis RJ, Mancuso A, Sayed N, Zhang XY, Pfeiffer HK, Nissim I, Daikhin E, Yudkoff M, McMahon SB, Thompson CB (2008) Myc regulates a transcriptional program that stimulates mitochondrial glutaminolysis and leads to glutamine addiction. Proc Natl Acad Sci U S A 105:18782–18787PubMedCrossRefGoogle Scholar
- 41.O’Flaherty L, Adam J, Heather LC, Zhdanov AV, Chung YL, Miranda MX, Croft J, Olpin S, Clarke K, Pugh CW, Griffiths J, Papkovsky D, Ashrafian H, Ratcliffe PJ, Pollard PJ (2010) Dysregulation of hypoxia pathways in fumarate hydratase-deficient cells is independent of defective mitochondrial metabolism. Hum Mol Genet 19:3844–3851PubMedCrossRefGoogle Scholar
- 42.Zhdanov AV, Favre C, O’Flaherty L, Adam J, O’Connor R, Pollard PJ, Papkovsky DB (2011) Comparative bioenergetic assessment of transformed cells using a cell energy budget platform. Integr Biol (Camb) 3:1135–1142CrossRefGoogle Scholar
- 43.Ferrick DA, Neilson A, Beeson C (2008) Advances in measuring cellular bioenergetics using extracellular flux. Drug Discov Today 13:268–274PubMedCrossRefGoogle Scholar
- 44.Hynes J, Natoli E, Jr, Will Y (2009) Fluorescent pH and oxygen probes of the assessment of mitochondrial toxicity in isolated mitochondria and whole cells. Curr Protoc Toxicol Chap. 2, Unit 2 16Google Scholar
- 45.Ashrafian H, O’Flaherty L, Adam J, Steeples V, Chung YL, East P, Vanharanta S, Lehtonen H, Nye E, Hatipoglu E, Miranda M, Howarth K, Shukla D, Troy H, Griffiths J, Spencer-Dene B, Yusuf M, Volpi E, Maxwell PH, Stamp G, Poulsom R, Pugh CW, Costa B, Bardella C, Di Renzo MF, Kotlikoff MI, Launonen V, Aaltonen L, El-Bahrawy M, Tomlinson I, Pollard PJ (2010) Expression profiling in progressive stages of fumarate-hydratase deficiency: the contribution of metabolic changes to tumorigenesis. Cancer Res 70:9153–9165Google Scholar
- 46.Wamelink MM, Struys EA, Jakobs C (2008) The biochemistry, metabolism and inherited defects of the pentose phosphate pathway: a review. J Inherit Metab Dis 31:703–717PubMedCrossRefGoogle Scholar
- 47.Launonen V, Vierimaa O, Kiuru M, Isola J, Roth S, Pukkala E, Sistonen P, Herva R, Aaltonen LA (2001) Inherited susceptibility to uterine leiomyomas and renal cell cancer. Proc Natl Acad Sci U S A 98:3387–3392PubMedCrossRefGoogle Scholar
- 48.Knox C, Sass E, Neupert W, Pines O (1998) Import into mitochondria, folding and retrograde movement of fumarase in yeast. J Biol Chem 273:25587–25593PubMedCrossRefGoogle Scholar
- 49.Tomlinson IP, Alam NA, Rowan AJ, Barclay E, Jaeger EE, Kelsell D, Leigh I, Gorman P, Lamlum H, Rahman S, Roylance RR, Olpin S, Bevan S, Barker K, Hearle N, Houlston RS, Kiuru M, Lehtonen R, Karhu A, Vilkki S, Laiho P, Eklund C, Vierimaa O, Aittomaki K, Hietala M, Sistonen P, Paetau A, Salovaara R, Herva R, Launonen V, Aaltonen LA (2002) Germline mutations in FH predispose to dominantly inherited uterine fibroids, skin leiomyomata and papillary renal cell cancer. Nat Genet 30:406–410PubMedCrossRefGoogle Scholar
- 50.
- 51.Zitova A, Cross M, Hernan R, Davenport J, Papkovsky DB (2009) Respirometric acute toxicity screening assay using Daphnia magna. Chem Ecol 25:217–227CrossRefGoogle Scholar
- 52.Zitova A, O’Mahony FC, Cross M, Davenport J, Papkovsky DB (2009) Toxicological profiling of chemical and environmental samples using panels of test organisms and optical oxygen respirometry. Environ Toxicol 24:116–127PubMedCrossRefGoogle Scholar
- 53.Schouest K, Zitova A, Spillane C, Papkovsky DB (2009) Toxicological assessment of chemicals using caenorhabditis elegant and optical oxygen respirometry. Environ Toxicol Chem 28:791–799PubMedCrossRefGoogle Scholar
- 54.Zitova A, O’Mahony FC, Kurochkin IN, Papkovsky DB (2010) A simple screening assay for cholinesterase activity and inhibition based on optical oxygen detection. Anal Lett 43:1746–1755CrossRefGoogle Scholar
- 55.Jezek P, Plecita-Hlavata L, Smolkova K, Rossignol R (2010) Distinctions and similarities of cell bioenergetics and the role of mitochondria in hypoxia, cancer, and embryonic development. Int J Biochem Cell Biol 42:604–622PubMedCrossRefGoogle Scholar
- 56.Linsenmeier RA (1986) Effects of light and darkness on oxygen distribution and consumption in the cat retina. J Gen Physiol 88:521–542PubMedCrossRefGoogle Scholar
- 57.Metzen E, Wolff M, Fandrey J, Jelkmann W (1995) Pericellular PO2 and O2 consumption in monolayer cell cultures. Respir Physiol 100:101–106PubMedCrossRefGoogle Scholar
- 58.Rumsey WL, Schlosser C, Nuutinen EM, Robiolio M, Wilson DF (1990) Cellular energetics and the oxygen dependence of respiration in cardiac myocytes isolated from adult rat. J Biol Chem 265:15392–15402PubMedGoogle Scholar
- 59.Zhdanov AV, Ogurtsov VI, Taylor CT, Papkovsky DB (2010) Monitoring of cell oxygenation and responses to metabolic stimulation by intracellular oxygen sensing technique. Integr Biol 2:443–451CrossRefGoogle Scholar
- 60.Bowman EJ, Siebers A, Altendorf K (1988) Bafilomycins: a class of inhibitors of membrane ATPases from microorganisms, animal cells, and plant cells. Proc Natl Acad Sci U S A 85:7972–7976PubMedCrossRefGoogle Scholar
- 61.Teplova VV, Tonshin AA, Grigoriev PA, Saris NE, Salkinoja-Salonen MS (2007) Bafilomycin A1 is a potassium ionophore that impairs mitochondrial functions. J Bioenerg Biomembr 39:321–329PubMedCrossRefGoogle Scholar
- 62.Schoonen WG, Stevenson JC, Westerink WM, Horbach GJ (2012) Cytotoxic effects of 109 reference compounds on rat H4IIE and human HepG2 hepatocytes. III: Mechanistic assays on oxygen consumption with MitoXpress and NAD(P)H production with Alamar Blue. Toxicol in Vitro 26:511–525PubMedCrossRefGoogle Scholar
- 63.O’Riordan TC, Soini AE, Soini JT, Papkovsky DB (2002) Performance evaluation of the phosphorescent porphyrin label: solid-phase immunoassay of alpha-fetoprotein. Anal Chem 74:5845–5850PubMedCrossRefGoogle Scholar
- 64.Kapellos GE, Alexiou TS, Payatakes AC (2007) A multiscale theoretical model for diffusive mass transfer in cellular biological media. Math Biosci 210:177–237PubMedCrossRefGoogle Scholar