Skip to main content

Optimized Response Function Estimation for Spherical Deconvolution

  • Conference paper
  • First Online:
Computational Diffusion MRI

Abstract

Constrained spherical deconvolution (CSD) is the most widely used algorithm to estimate fiber orientations for tractography in diffusion-weighted magnetic resonance imaging. CSD models the diffusion-weighted signal as the convolution of a fiber orientation distribution function and a “single fiber response function”, representing the signal profile of a population of aligned fibers. The performance of CSD relies crucially on the robust and accurate estimation of this response function, which is typically done by aligning and averaging a set of noisy, rotated single fiber signals. We show that errors in the alignment step of this procedure lead to an observable bias, and introduce an alternative algorithm based on rotational invariants that entirely avoids the problematic alignment step. The corresponding estimator is proven to be unbiased and consistent, which is verified experimentally.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Aguerrebere, C., Delbracio, M., Bartesaghi, A., Sapiro, G.: Fundamental limits in multi-image alignment. IEEE Trans. Signal Proc. 64(21), 5707–5722 (2016)

    Article  MathSciNet  Google Scholar 

  2. Bendory, T., Boumal, N., Ma, C., Zhao, Z., Singer, A.: Bispectrum inversion with application to multireference alignment. IEEE Trans. Signal Proc. 66(4), 1037–1050 (2018)

    Article  MathSciNet  Google Scholar 

  3. Essen, D.C.V., Smith, S.M., Barch, D.M., Behrens, T.E., Yacoub, E., Ugurbil, K.: The WU-Minn human connectome project: an overview. NeuroImage 80, 62–79 (2013)

    Google Scholar 

  4. Garyfallidis, E., Brett, M., Amirbekian, B., Rokem, A., Van Der Walt, S., Descoteaux, M., Nimmo-Smith, I.: Dipy, a library for the analysis of diffusion MRI data. Frontiers Neuroinform. 8, 8 (2014)

    Article  Google Scholar 

  5. Perry, A., Weed, J., Bandeira, A.S., Rigollet, P., Singer, A.: The sample complexity of multi-reference alignment. CoRR (2017). arXiv:abs/1707.00943

  6. Tax, C.M., Jeurissen, B., Vos, S.B., Viergever, M.A., Leemans, A.: Recursive calibration of the fiber response function for spherical deconvolution of diffusion MRI data. NeuroImage 86, 67–80 (2014)

    Article  Google Scholar 

  7. Tournier, J.D., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35(4), 1459–1472 (2007)

    Article  Google Scholar 

  8. Tournier, J.D., Calamante, F., Connelly, A.: Determination of the appropriate \(b\)-value and number of gradient directions for high-angular-resolution diffusion-weighted imaging. NMR Biomed. 26(12), 1775–1786 (2013)

    Google Scholar 

  9. Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22(1), 53–66 (2012)

    Article  Google Scholar 

Download references

Acknowledgments

The authors would like to thank ID for discussions related to this work. This research was supported by the Centre for Stochastic Geometry and Advanced Bioimaging and by a block stipendium, both funded by the Villum Foundation. Data were provided in part by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tom Dela Haije .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Dela Haije, T., Feragen, A. (2020). Optimized Response Function Estimation for Spherical Deconvolution. In: Bonet-Carne, E., Hutter, J., Palombo, M., Pizzolato, M., Sepehrband, F., Zhang, F. (eds) Computational Diffusion MRI. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-030-52893-5_3

Download citation

Publish with us

Policies and ethics