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Omics Approaches for Cold Stress Tolerance in Plants

  • Aafreen Sakina
  • Wasia Wani
  • Muntazir Mushtaq
  • Shabir Hussain Wani
  • Asif B. Shikari
Chapter

Abstract

Low temperature is a noteworthy risk that limits development, advancement and distribution, causing the plant harm and harvest misfortunes. Plants react to cold stress through a process known as cold acclimation, which is a complex process involving changes at different dimensions that incorporate physiological and biochemical modifications, modifications in gene expression and changes in convergences of proteins and metabolites. Perception of cold stress by cell layers results in initiation of cold-responsive genes and transcription factors that help combat cold stress. Transcriptional reactions to cold are guided by both abscisic acid (ABA) dependent and independent pathways that regulate the expression of cold-responsive (COR) genes and in this way changing protein and metabolite homeostasis. Recent advances in the field of genomics, proteomics and metabolomics have led to new findings that have enlarged our comprehension of this perplexing wonder. Here, we examine the different parts of cold stress reactions in plants to build up an all-encompassing comprehension in the field of stress-intervened flagging.

Keywords

Cold stress Proteomics Metabolomics Transcriptomics Cold acclimation 

Abbreviations

2D-DIGE

2D differential gel electrophoresis

ADH

Alcohol dehydrogenase

APETALA2

Ethylene responsive factor

AtCBF3

Arabidopsis thaliana C-repeat binding factors

CA

Cold acclimation

Cbf

C-repeat binding factors

CE-MS

Narrow electrophoresis coupled to mass spectrometry

Coda

Choline oxidase A

Cor

Cold-regulated genes

CT

Cold tolerant

DA

Deacclimation

DaCBF4

Deschampsia antarctica C-repeat binding factors

DHNs

Dehydrin proteins

DREB

Dehydration responsive element binding protein

ERD10

Early responsive to dehydration proteins

FLAs

Fasciclin-like arabinogalactan protein

FT

Freezing tolerance

FT-ICR/MS

Fourier change particle cyclotron reverberation mass spectrometry

GABA

Gamma-aminobutyric acid (GABA)

GB

Glycine betaine

GB

Glycine betaine (GB)

GC-MS

Gas chromatography coupled to mass spectrometry

HSPs

Heat shock proteins

ICAT

Isotope-coded affinity tags

ILs

Introgression lines

iTRAQ

Isobaric tags for relative and absolute quantitation

LC-MS

Liquid chromatography coupled to mass spectrometry

LC-PDA/MS

Liquid chromatography- photodiode analysis coupled to mass spectrometry

LeCBF1

Lycopersicon esculentum C-repeat binding factors

LRR

Leucine-rich repeat protein kinase

MAS

Marker assisted selection

MDR1

Multidrug resistance 1

MS

Mass spectrometry

MS

Mass spectrometry

NMR

Nuclear magnetic resonance

OsiSAP1

Zinc finger protein of rice cultivars

PCR

Polymerase chain reaction

PDR8

Pleiotropic drug resistance 8

PEG

Polyethylene glycol

PLDδ

Phospholipase Dδ

PM

Plasma membrane

PSI, PSII

Photosystems I, II

PTMs

Post-translational modifications

QTL

Quantitative trait loci

RAP

Ethylene responsive factor

RG

Rootstock grafted

ROS

Reactive oxygen species

RuBisCO

Ribulose bisphosphate carboxylase/oxygenase

SILAC

Stable isotope labeling by amino acids in cell culture

SSR

Simple sequence repeats

STN7

Serine/threonine protein kinase

SYT1

Synaptotagmin

WCS120

Wheat cold stress responsive gene

WT

Wild type

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© Springer Nature Switzerland AG 2019

Authors and Affiliations

  1. 1.Department of Plant Biotechnology, Faculty of HorticultureSKUAST-KashmirJammu and KashmirIndia
  2. 2.School of BiotechnologySKUAST-JammuJammu and KashmirIndia
  3. 3.Mountain Research Centre for Field CropsKhudwaniIndia
  4. 4.Mountain Crop Research Station, SagamSKUAST-KashmirJammu and KashmirIndia

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