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Mass Spectrometry- and Computational Structural Biology-Based Investigation of Proteins and Peptides

  • Marius Mihăşan
  • Kelly L. Wormwood
  • Izabela Sokolowska
  • Urmi Roy
  • Alisa G. Woods
  • Costel C. DarieEmail author
Chapter
Part of the Advances in Experimental Medicine and Biology book series (AEMB, volume 1140)

Abstract

Recent developments of mass spectrometry (MS) allow us to identify, estimate, and characterize proteins and protein complexes. At the same time, structural biology helps to determine the protein structure and its structure-function relationship. Together, they aid to understand the protein structure, property, function, protein-complex assembly, protein-protein interaction, and dynamics. The present chapter is organized with illustrative results to demonstrate how experimental mass spectrometry can be combined with computational structural biology for detailed studies of protein’s structures. We have used tumor differentiation factor protein/peptide as ligand and Hsp70/Hsp90 as receptor protein as examples to study ligand-protein interaction. To investigate possible protein conformation, we will describe two proteins—lysozyme and myoglobin. As an application of MS-based assignment of disulfide bridges, the case of the spider venom polypeptide Phα1β will also be discussed.

Keywords

Structural biology Mass spectrometry Tumor differentiation factor Protein complex Protein-protein interactions Disulfide bridges assignment 

Notes

Acknowledgments

KLW was supported by the ASPIRE Graduate Student Fellowship through Clarkson University’s CUPO Office. MM was supported by the Fulbright Senior Postdoctoral Fellowship awarded by the Romania-USA Fulbright Commission to MM (guest) and CCD (host). MM and CCD are thankful to the newly established Erasmus+ exchange program between “Al. I. Cuza” University of Iasi, Romania and Clarkson University of Potsdam, NY, USA.

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Marius Mihăşan
    • 1
    • 2
  • Kelly L. Wormwood
    • 1
  • Izabela Sokolowska
    • 1
  • Urmi Roy
    • 1
  • Alisa G. Woods
    • 1
  • Costel C. Darie
    • 1
    Email author
  1. 1.Biochemistry & Proteomics Group, Structural Biology & Molecular Modeling Unit, Department of Chemistry & Biomolecular ScienceClarkson UniversityPotsdamUSA
  2. 2.Department of BiologyAlexandru Ioan Cuza University of IasiIasiRomania

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