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Rough Set Theory as a Data Mining Technique: A Case Study in Epidemiology and Cancer Incidence Prediction

  • Zaineb Chelly DagdiaEmail author
  • Christine Zarges
  • Benjamin Schannes
  • Martin Micalef
  • Lino Galiana
  • Benoît Rolland
  • Olivier de Fresnoye
  • Mehdi Benchoufi
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 11053)

Abstract

A big challenge in epidemiology is to perform data pre-processing, specifically feature selection, on large scale data sets with a high dimensional feature set. In this paper, this challenge is tackled by using a recently established distributed and scalable version of Rough Set Theory (RST. It considers epidemiological data that has been collected from three international institutions for the purpose of cancer incidence prediction. The concrete data set used aggregates about 5 495 risk factors (features), spanning 32 years and 38 countries. Detailed experiments demonstrate that RST is relevant to real world big data applications as it can offer insights into the selected risk factors, speed up the learning process, ensure the performance of the cancer incidence prediction model without huge information loss, and simplify the learned model for epidemiologists. Code related to this paper is available at: https://github.com/zeinebchelly/Sp-RST.

Keywords

Big data Rough set theory Feature selection Epidemiology Cancer incidence prediction Application 

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Zaineb Chelly Dagdia
    • 1
    • 2
    Email author
  • Christine Zarges
    • 1
  • Benjamin Schannes
    • 3
  • Martin Micalef
    • 4
  • Lino Galiana
    • 5
  • Benoît Rolland
    • 6
  • Olivier de Fresnoye
    • 7
  • Mehdi Benchoufi
    • 7
    • 8
    • 9
  1. 1.Department of Computer ScienceAberystwyth UniversityAberystwythUK
  2. 2.LARODEC, Institut Supérieur de Gestion de TunisTunisTunisia
  3. 3.Department of StatisticsENSAEPalaiseauFrance
  4. 4.ActuarisParisFrance
  5. 5.ENS LyonLyon Cedex 07France
  6. 6.Altran Technologies S.A.Neuilly-sur-SeineFrance
  7. 7.Coordinateur Scientifique Programme ÉpidemiumParisFrance
  8. 8.Centre d’Épidémiologie CliniqueHôpital Hôtel Dieu, Assistance Publique-Hôpitaux de ParisParisFrance
  9. 9.Faculté de MédecineUniversité Paris Descartes and INSERM UMR1153ParisFrance

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