Molecular Pathology of Lung Cancer

Chapter
Part of the Current Clinical Oncology book series (CCO)

Abstract

In contrast to most other organs, the lungs demonstrate a very wide range of epithelial tumors that vary in their location and histology. These tumors show varying degrees of relationship to smoke exposure, with the central carcinomas showing the greatest relationship. The molecular lesions found in the tumors share certain common elements and have characteristic changes. Their precursor lesions also differ, with some being well defined, whereas others are poorly understood because of the difficulty in identifying them before surgical resection of an existing tumor. Thus, their natural history is also poorly understood. The advent of newer molecular genetic methods to examine lung tumor and preneoplastic lesion tissue specimens will help delineate all the significant molecular abnormalities responsible for lung cancer development and progression. Gene-specific and copy-number alteration approaches have identified mutations that have proven to be unique in lung cancer. Simultaneously, molecular profiling studies at DNA, RNA, and protein levels have provided a molecular classification of lung cancer while also improving the ability to predict prognosis and response to treatment. The integration of these different platforms might overcome the overtraining and instability of the identified signatures. Combining clinical covariates with molecular profiling approaches may be the optimal approach for building new models for lung cancer. The ultimate goal is to be able to identify all molecular changes present in any one patient’s tumor and to use this information for early molecular detection, prediction of biological/clinical behavior and prognosis, and selection or rational development of therapeutics.

Keywords

Molecular pathology Lung cancer Oncogenes Tumor suppressor genes Preneoplasia Pathogenesis 

References

  1. 1.
    Minna JD, Gazdar A (2002) Focus on lung cancer. Cancer Cell 1:49-52PubMedCrossRefGoogle Scholar
  2. 2.
    Herbst RS, Heymach JV, Lippman SM (2008) Lung cancer. N Engl J Med 359:1367-1380PubMedCrossRefGoogle Scholar
  3. 3.
    Travis WD, Brambilla E, Muller-Hermelink HK, Harris CC (2004) Tumours of the lung. In: Travis WD, Brambilla E, Muller-Hermelink HK, Harris CC (eds) Pathology and genetics: tumours of the lung, pleura, thymus and heart. International Agency for Research on Cancer (IARC), Lyon, pp 9-124Google Scholar
  4. 4.
    Hanahan D, Weinberg RA (2000) The hallmarks of cancer. Cell 100:57-70PubMedCrossRefGoogle Scholar
  5. 5.
    Fong KM, Sekido Y, Gazdar AF, Minna JD (2003) Lung cancer. 9: molecular biology of lung cancer: clinical implications. Thorax 58:892-900PubMedCrossRefGoogle Scholar
  6. 6.
    Herbst RS, Sandler AB (2004) Overview of the current status of human epidermal growth factor receptor inhibitors in lung cancer. Clin Lung Cancer 6(Suppl 1):S7-S19PubMedCrossRefGoogle Scholar
  7. 7.
    Herbst RS, Onn A, Sandler A (2005) Angiogenesis and lung cancer: prognostic and therapeutic implications. J Clin Oncol 23:3243-3256PubMedCrossRefGoogle Scholar
  8. 8.
    Wistuba II, Mao L, Gazdar AF (2002) Smoking molecular damage in bronchial epithelium. Oncogene 21:7298-7306PubMedCrossRefGoogle Scholar
  9. 9.
    Wistuba II (2007) Genetics of preneoplasia: lessons from lung cancer. Curr Mol Med 7:3-14PubMedCrossRefGoogle Scholar
  10. 10.
    Westra WH (2000) Early glandular neoplasia of the lung. Respir Med 1:163-169Google Scholar
  11. 11.
    Fong KM, Minna JD (2002) Molecular biology of lung cancer: clinical implications. Clin Chest Med 23:83-101PubMedCrossRefGoogle Scholar
  12. 12.
    Knudson AG (1989) Hereditary cancers: clues to mechanisms of carcinogenesis. Br J Cancer 59:661-666PubMedCrossRefGoogle Scholar
  13. 13.
    Soda M, Choi YL, Enomoto M et al (2007) Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer. Nature 448:561-566PubMedCrossRefGoogle Scholar
  14. 14.
    Inamura K, Takeuchi K, Togashi Y et al (2008) EML4-ALK fusion is linked to histological characteristics in a subset of lung cancers. J Thorac Oncol 3:13-17PubMedCrossRefGoogle Scholar
  15. 15.
    Wistuba II, Behrens C, Virmani AK et al (2000) High resolution chromosome 3p allelotyping of human lung cancer and preneoplastic/preinvasive bronchial epithelium reveals multiple, discontinuous sites of 3p allele loss and three regions of frequent breakpoints. Cancer Res 60:1949-1960PubMedGoogle Scholar
  16. 16.
    Toyooka S, Toyooka KO, Maruyama R et al (2001) DNA methylation profiles of lung tumors. Mol Cancer Ther 1:61-67PubMedGoogle Scholar
  17. 17.
    Wistuba II, Gazdar AF, Minna JD (2001) Molecular genetics of small cell lung carcinoma. Semin Oncol 28:3-13PubMedCrossRefGoogle Scholar
  18. 18.
    Bhattacharjee A, Richards WG, Staunton J et al (2001) Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc Natl Acad Sci USA 98:13790-13795PubMedCrossRefGoogle Scholar
  19. 19.
    Garber ME, Troyanskaya OG, Schluens K et al (2001) Diversity of gene expression in adenocarcinoma of the lung. Proc Natl Acad Sci USA 98:13784-13789PubMedCrossRefGoogle Scholar
  20. 20.
    Brambilla E, Travis WD, Colby TV, Corrin B, Shimosato Y (2001) The new World Health Organization classification of lung tumours. Eur Respir J 18:1059-1068PubMedCrossRefGoogle Scholar
  21. 21.
    Travis WD, Garg K, Franklin WA et al (2005) Evolving concepts in the pathology and computed tomography imaging of lung adenocarcinoma and bronchioloalveolar carcinoma. J Clin Oncol 23:3279-3287PubMedCrossRefGoogle Scholar
  22. 22.
    Hammar SP, Brambilla C, Pugatch B et al (2004) Tumours of the lung. Squamous cell carcinoma. In: Travis WD, Brambilla E, Muller-Hermelink HK, Harris CC (eds) Pathology and genetics: tumours of the lung, pleura, thymus and heart. IARC, Lyon, pp 26-34Google Scholar
  23. 23.
    Colby TV, Koss MN, Travis WD (1995) Tumors of the lower respiratory tract, 3rd. series, Fascicle 13. Armed Forces Institute of Pathology, Washington, DCGoogle Scholar
  24. 24.
    Brambilla C, Pugatch B, Geisinger K et al (2004) Tumours of the lung. Large cell carcinoma. In: Travis WD, Brambilla E, Muller-Hermelink HK, Harris CC (eds) Pathology and genetics: tumours of the lung, pleura, thymus and heart. IARC, Lyon, pp 45-50Google Scholar
  25. 25.
    Shigematsu H, Lin L, Takahashi T et al (2005) Clinical and biological features associated with epidermal growth factor receptor gene mutations in lung cancers. J Natl Cancer Inst 97:339-346PubMedCrossRefGoogle Scholar
  26. 26.
    Shigematsu H, Takahashi T, Nomura M et al (2005) Somatic mutations of the HER2 kinase domain in lung adenocarcinomas. Cancer Res 65:1642-1646PubMedCrossRefGoogle Scholar
  27. 27.
    Davies H, Bignell GR, Cox C et al (2002) Mutations of the BRAF gene in human cancer. Nature 417:949-954PubMedCrossRefGoogle Scholar
  28. 28.
    Brose MS, Volpe P, Feldman M et al (2002) BRAF and RAS mutations in human lung cancer and melanoma. Cancer Res 62:6997-7000PubMedGoogle Scholar
  29. 29.
    Riely GJ, Kris MG, Rosenbaum D et al (2008) Frequency and distinctive spectrum of KRAS mutations in never smokers with lung adenocarcinoma. Clin Cancer Res 14:5731-5734PubMedCrossRefGoogle Scholar
  30. 30.
    Slebos RJ, Rodenhuis S (1992) The ras gene family in human non-small-cell lung cancer. Monogr Natl Cancer Inst 13:23-29PubMedGoogle Scholar
  31. 31.
    Paez JG, Janne PA, Lee JC et al (2004) EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy. Science 304:1497-1500PubMedCrossRefGoogle Scholar
  32. 32.
    Lynch TJ, Bell DW, Sordella R et al (2004) Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 350:2129-2139PubMedCrossRefGoogle Scholar
  33. 33.
    Pao W, Miller V, Zakowski M et al (2004) EGF receptor gene mutations are common in lung cancers from “never smokers” and are associated with sensitivity of tumors to gefitinib and erlotinib. Proc Natl Acad Sci USA 101:13306-13311PubMedCrossRefGoogle Scholar
  34. 34.
    Huang SF, Liu HP, Li LH et al (2004) High frequency of epidermal growth factor receptor mutations with complex patterns in non-small cell lung cancers related to gefitinib responsiveness in Taiwan. Clin Cancer Res 10:8195-8203PubMedCrossRefGoogle Scholar
  35. 35.
    Kosaka T, Yatabe Y, Endoh H, Kuwano H, Takahashi T, Mitsudomi T (2004) Mutations of the epidermal growth factor receptor gene in lung cancer: biological and clinical implications. Cancer Res 64:8919-8923PubMedCrossRefGoogle Scholar
  36. 36.
    Tokumo M, Toyooka S, Kiura K et al (2005) The relationship between epidermal growth factor receptor mutations and clinicopathologic features in non-small cell lung cancers. Clin Cancer Res 11:1167-1173PubMedGoogle Scholar
  37. 37.
    Amann J, Kalyankrishna S, Massion PP et al (2005) Aberrant epidermal growth factor receptor signaling and enhanced sensitivity to EGFR inhibitors in lung cancer. Cancer Res 65:226-235PubMedGoogle Scholar
  38. 38.
    Gazdar AF, Shigematsu H, Herz J, Minna JD (2004) Mutations and addiction to EGFR: the Achilles ‘heal’ of lung cancers? Trends Mol Med 10:481-486PubMedCrossRefGoogle Scholar
  39. 39.
    Hirsch FR, Varella-Garcia M, Bunn PA Jr et al (2003) Epidermal growth factor receptor in non-small-cell lung carcinomas: correlation between gene copy number and protein expression and impact on prognosis. J Clin Oncol 21:3798-3807PubMedCrossRefGoogle Scholar
  40. 40.
    Cappuzzo F, Hirsch FR, Rossi E et al (2005) Epidermal growth factor receptor gene and protein and gefitinib sensitivity in non-small-cell lung cancer. J Natl Cancer Inst 97:643-655PubMedCrossRefGoogle Scholar
  41. 41.
    Tsao MS, Sakurada A, Cutz JC et al (2005) Erlotinib in lung cancer - molecular and clinical predictors of outcome. N Engl J Med 353:133-144PubMedCrossRefGoogle Scholar
  42. 42.
    Hirsch FR, Varella-Garcia M, McCoy J et al (2005) Increased epidermal growth factor receptor gene copy number detected by fluorescence in situ hybridization associates with increased sensitivity to gefitinib in patients with bronchioloalveolar carcinoma subtypes: a Southwest Oncology Group Study. J Clin Oncol 23(28):6838-6845PubMedCrossRefGoogle Scholar
  43. 43.
    Jackman DM, Holmes AJ, Lindeman N et al (2006) Response and resistance in a non-small-cell lung cancer patient with an epidermal growth factor receptor mutation and leptomeningeal metastases treated with high-dose gefitinib. J Clin Oncol 24:4517-4520PubMedCrossRefGoogle Scholar
  44. 44.
    Massarelli E, Varella-Garcia M, Tang X et al (2007) KRAS mutation is an important predictor of resistance to therapy with epidermal growth factor receptor tyrosine kinase inhibitors in non-small-cell lung cancer. Clin Cancer Res 13:2890-2896PubMedCrossRefGoogle Scholar
  45. 45.
    Bunn PA Jr, Dziadziuszko R, Varella-Garcia M et al (2006) Biological markers for non-small cell lung cancer patient selection for epidermal growth factor receptor tyrosine kinase inhibitor therapy. Clin Cancer Res 12:3652-3656PubMedCrossRefGoogle Scholar
  46. 46.
    Zhu CQ, da Cunha Santos G, Ding K et al (2008) Role of KRAS and EGFR as biomarkers of response to erlotinib in National Cancer Institute of Canada Clinical Trials Group Study BR.21. J Clin Oncol 26:4268-4275PubMedCrossRefGoogle Scholar
  47. 47.
    Pao W, Miller VA, Politi KA et al (2005) Acquired resistance of lung adenocarcinomas to gefitinib or erlotinib is associated with a second mutation in the EGFR kinase domain. PLoS Med 2:1-11CrossRefGoogle Scholar
  48. 48.
    Kobayashi S, Boggon TJ, Dayaram T et al (2005) EGFR mutation and resistance of non-small-cell lung cancer to gefitinib. N Engl J Med 352:786-792PubMedCrossRefGoogle Scholar
  49. 49.
    Engelman JA, Zejnullahu K, Mitsudomi T et al (2007) MET amplification leads to gefitinib resistance in lung cancer by activating ERBB3 signaling. Science 316:1039-1043PubMedCrossRefGoogle Scholar
  50. 50.
    Morgillo F, Kim WY, Kim ES, Ciardiello F, Hong WK, Lee HY (2007) Implication of the insulin-like growth factor-IR pathway in the resistance of non-small cell lung cancer cells to treatment with gefitinib. Clin Cancer Res 13:2795-2803PubMedCrossRefGoogle Scholar
  51. 51.
    Yauch RL, Januario T, Eberhard DA et al (2005) Epithelial versus mesenchymal phenotype determines in vitro sensitivity and predicts clinical activity of erlotinib in lung cancer patients. Clin Cancer Res 11:8686-8698PubMedCrossRefGoogle Scholar
  52. 52.
    Weir BA, Woo MS, Getz G et al (2007) Characterizing the cancer genome in lung adenocarcinoma. Nature 450:893-898PubMedCrossRefGoogle Scholar
  53. 53.
    Ikeda K, Clark JC, Shaw-White JR, Stahlman MT, Boutell CJ, Whitsett JA (1995) Gene structure and expression of human thyroid transcription factor-1 in respiratory epithelial cells. J Biol Chem 270:8108-8114PubMedCrossRefGoogle Scholar
  54. 54.
    Yatabe Y, Kosaka T, Takahashi T, Mitsudomi T (2005) EGFR mutation is specific for terminal respiratory unit type adenocarcinoma. Am J Surg Pathol 29:633-639PubMedCrossRefGoogle Scholar
  55. 55.
    Perner S, Wagner P, Soltermann A et al (2009) TTF1 expression in non-small cell lung carcinoma: association with TTF1 gene amplification and improved survival. J Pathol 217:65-72PubMedCrossRefGoogle Scholar
  56. 56.
    Ding L, Getz G, Wheeler DA et al (2008) Somatic mutations affect key pathways in lung adenocarcinoma. Nature 455:1069-1075PubMedCrossRefGoogle Scholar
  57. 57.
    Toyooka S, Tsuda T, Gazdar AF (2003) The TP53 gene, tobacco exposure, and lung cancer. Hum Mutat 21:229-239PubMedCrossRefGoogle Scholar
  58. 58.
    Toyooka S, Maruyama R, Toyooka KO et al (2003) Smoke exposure, histologic type and geography-related differences in the methylation profiles of non-small cell lung cancer. Int J Cancer 103:153-160PubMedCrossRefGoogle Scholar
  59. 59.
    Toyooka S, Suzuki M, Maruyama R et al (2004) The relationship between aberrant methylation and survival in non-small-cell lung cancers. Br J Cancer 91:771-774PubMedGoogle Scholar
  60. 60.
    Ji H, Ramsey MR, Hayes DN et al (2007) LKB1 modulates lung cancer differentiation and metastasis. Nature 448:807-810PubMedCrossRefGoogle Scholar
  61. 61.
    Sandler AB, Johnson DH, Herbst RS (2004) Anti-vascular endothelial growth factor monoclonals in non-small cell lung cancer. Clin Cancer Res 10:4258s-4262sPubMedCrossRefGoogle Scholar
  62. 62.
    Asahara T, Takahashi T, Masuda H et al (1999) VEGF contributes to postnatal neovascularization by mobilizing bone marrow-derived endothelial progenitor cells. EMBO J 18:3964-3972PubMedCrossRefGoogle Scholar
  63. 63.
    Han H, Silverman JF, Santucci TS et al (2001) Vascular endothelial growth factor expression in stage I non-small cell lung cancer correlates with neoangiogenesis and a poor prognosis. Ann Surg Oncol 8:72-79PubMedCrossRefGoogle Scholar
  64. 64.
    Shikada Y, Yonemitsu Y, Koga T et al (2005) Platelet-derived growth factor-AA is an essential and autocrine regulator of vascular endothelial growth factor expression in non-small cell lung carcinomas. Cancer Res 65:7241-7248PubMedCrossRefGoogle Scholar
  65. 65.
    Kim SJ, Rabbani ZN, Dewhirst MW et al (2005) Expression of HIF-1alpha, CA IX, VEGF, and MMP-9 in surgically resected non-small cell lung cancer. Lung Cancer 49:325-335PubMedCrossRefGoogle Scholar
  66. 66.
    Kuhn H, Kopff C, Konrad J, Riedel A, Gessner C, Wirtz H (2004) Influence of basic fibroblast growth factor on the proliferation of non-small cell lung cancer cell lines. Lung Cancer 44:167-174PubMedCrossRefGoogle Scholar
  67. 67.
    Dailey L, Ambrosetti D, Mansukhani A, Basilico C (2005) Mechanisms underlying differential responses to FGF signaling. Cytokine Growth Factor Rev 16:233-247PubMedCrossRefGoogle Scholar
  68. 68.
    Ribatti D, Vacca A, Rusnati M, Presta M (2007) The discovery of basic fibroblast growth factor/fibroblast growth factor-2 and its role in haematological malignancies. Cytokine Growth Factor Rev 18(3-4):327-334PubMedCrossRefGoogle Scholar
  69. 69.
    Mohammadi M, Olsen SK, Ibrahimi OA (2005) Structural basis for fibroblast growth factor receptor activation. Cytokine Growth Factor Rev 16:107-137PubMedCrossRefGoogle Scholar
  70. 70.
    Takanami I, Tanaka F, Hashizume T et al (1996) The basic fibroblast growth factor and its receptor in pulmonary adenocarcinomas: an investigation of their expression as prognostic markers. Eur J Cancer 32A:1504-1509PubMedCrossRefGoogle Scholar
  71. 71.
    Takanami I, Tanaka F, Hashizume T, Kodaira S (1997) Tumor angiogenesis in pulmonary adenocarcinomas: relationship with basic fibroblast growth factor, its receptor, and survival. Neoplasma 44:295-298PubMedGoogle Scholar
  72. 72.
    Volm M, Koomagi R, Mattern J, Stammler G (1997) Prognostic value of basic fibroblast growth factor and its receptor (FGFR-1) in patients with non-small cell lung carcinomas. Eur J Cancer 33:691-693PubMedCrossRefGoogle Scholar
  73. 73.
    Guddo F, Fontanini G, Reina C, Vignola AM, Angeletti A, Bonsignore G (1999) The expression of basic fibroblast growth factor (bFGF) in tumor-associated stromal cells and vessels is inversely correlated with non-small cell lung cancer progression. Hum Pathol 30:788-794PubMedCrossRefGoogle Scholar
  74. 74.
    Shou Y, Hirano T, Gong Y et al (2001) Influence of angiogenetic factors and matrix metalloproteinases upon tumour progression in non-small-cell lung cancer. Br J Cancer 85:1706-1712PubMedCrossRefGoogle Scholar
  75. 75.
    Iwasaki A, Kuwahara M, Yoshinaga Y, Shirakusa T (2004) Basic fibroblast growth factor (bFGF) and vascular endothelial growth factor (VEGF) levels, as prognostic indicators in NSCLC. Eur J Cardiothorac Surg 25:443-448PubMedCrossRefGoogle Scholar
  76. 76.
    Bremnes RM, Camps C, Sirera R (2006) Angiogenesis in non-small cell lung cancer: the prognostic impact of neoangiogenesis and the cytokines VEGF and bFGF in tumours and blood. Lung Cancer 51:143-158PubMedCrossRefGoogle Scholar
  77. 77.
    Berger W, Setinek U, Mohr T et al (1999) Evidence for a role of FGF-2 and FGF receptors in the proliferation of non-small cell lung cancer cells. Int J Cancer 83:415-423PubMedCrossRefGoogle Scholar
  78. 78.
    Behrens C, Lin HY, Lee JJ et al (2008) Immunohistochemical expression of basic fibroblast growth factor and fibroblast growth factor receptors 1 and 2 in the pathogenesis of lung cancer. Clin Cancer Res 14:6014-6022PubMedCrossRefGoogle Scholar
  79. 79.
    Thiery JP (2002) Epithelial-mesenchymal transitions in tumour progression. Nat Rev Cancer 2:442-454PubMedCrossRefGoogle Scholar
  80. 80.
    Thiery JP, Sleeman JP (2006) Complex networks orchestrate epithelial-mesenchymal transitions. Nat Rev Mol Cell Biol 7:131-142PubMedCrossRefGoogle Scholar
  81. 81.
    Thomson S, Buck E, Petti F et al (2005) Epithelial to mesenchymal transition is a determinant of sensitivity of non-small-cell lung carcinoma cell lines and xenografts to epidermal growth factor receptor inhibition. Cancer Res 65:9455-9462PubMedCrossRefGoogle Scholar
  82. 82.
    Elayadi AN, Samli KN, Prudkin L et al (2007) A Peptide Selected by Biopanning Identifies the Integrin {alpha}v{beta}6 as a Prognostic Biomarker for Nonsmall Cell Lung Cancer. Cancer Res 67:5889-5895PubMedCrossRefGoogle Scholar
  83. 83.
    Bremnes RM, Veve R, Hirsch FR, Franklin WA (2002) The E-cadherin cell-cell adhesion complex and lung cancer invasion, metastasis, and prognosis. Lung Cancer 36:115-124PubMedCrossRefGoogle Scholar
  84. 84.
    Schiller JH, Harrington D, Belani CP et al (2002) Comparison of four chemotherapy regimens for advanced non-small-cell lung cancer. N Engl J Med 346:92-98PubMedCrossRefGoogle Scholar
  85. 85.
    Altaha R, Liang X, Yu JJ, Reed E (2004) Excision repair cross complementing-group 1: gene expression and platinum resistance. Int J Mol Med 14:959-970PubMedGoogle Scholar
  86. 86.
    Simon GR, Sharma S, Cantor A, Smith P, Bepler G (2005) ERCC1 expression is a predictor of survival in resected patients with non-small cell lung cancer. Chest 127:978-983PubMedCrossRefGoogle Scholar
  87. 87.
    Zheng Z, Chen T, Li X, Haura E, Sharma A, Bepler G (2007) DNA synthesis and repair genes RRM1 and ERCC1 in lung cancer. N Engl J Med 356:800-808PubMedCrossRefGoogle Scholar
  88. 88.
    Lord RV, Brabender J, Gandara D et al (2002) Low ERCC1 expression correlates with prolonged survival after cisplatin plus gemcitabine chemotherapy in non-small cell lung cancer. Clin Cancer Res 8:2286-2291PubMedGoogle Scholar
  89. 89.
    Cobo M, Isla D, Massuti B et al (2007) Customizing cisplatin based on quantitative excision repair cross-complementing 1 mRNA expression: a phase III trial in non-small-cell lung cancer. J Clin Oncol 25:2747-2754PubMedCrossRefGoogle Scholar
  90. 90.
    Olaussen KA, Mountzios G, Soria JC (2007) ERCC1 as a risk stratifier in platinum-based chemotherapy for nonsmall-cell lung cancer. Curr Opin Pulm Med 13:284-289PubMedCrossRefGoogle Scholar
  91. 91.
    Bepler G, Garcia-Blanco MA (1994) Three tumor-suppressor regions on chromosome 11p identified by high-resolution deletion mapping in human non-small-cell lung cancer. Proc Natl Acad Sci USA 91:5513-5517PubMedCrossRefGoogle Scholar
  92. 92.
    Bepler G, Sharma S, Cantor A et al (2004) RRM1 and PTEN as prognostic parameters for overall and disease-free survival in patients with non-small-cell lung cancer. J Clin Oncol 22:1878-1885PubMedCrossRefGoogle Scholar
  93. 93.
    Bepler G, Kusmartseva I, Sharma S et al (2006) RRM1 modulated in vitro and in vivo efficacy of gemcitabine and platinum in non-small-cell lung cancer. J Clin Oncol 24:4731-4737PubMedCrossRefGoogle Scholar
  94. 94.
    Bepler G (2007) Phase II pharmacogenomics-based adjuvant therapy trial in patients with non-small-cell lung cancer: Southwest Oncology Group Trial 0720. Clin Lung Cancer 8:509-511PubMedGoogle Scholar
  95. 95.
    Travis WD, Nicholson S, Hirsch F et al (2004) Tumours of the lung. Small cell carcinoma. In: Travis WD, Brambilla E, Muller-Hermelink HK, Harris CC (eds) Pathology and genetics: tumours of the lung, pleura, thymus and heart. IARC, Lyon, pp 31-34Google Scholar
  96. 96.
    Wistuba II, Gazdar AF (2000) Molecular pathology of lung cancer. Verh Dtsch Ges Pathol 84:96-105PubMedGoogle Scholar
  97. 97.
    Girard L, Zochbauer-Muller S, Virmani AK, Gazdar AF, Minna JD (2000) Genome-wide allelotyping of lung cancer identifies new regions of allelic loss, differences between small cell lung cancer and non-small cell lung cancer, and loci clustering. Cancer Res 60:4894-4906PubMedGoogle Scholar
  98. 98.
    Beer DG, Kardia SL, Huang CC et al (2002) Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med 8:816-824PubMedGoogle Scholar
  99. 99.
    Larsen JE, Pavey SJ, Passmore LH, Bowman RV, Hayward NK, Fong KM (2007) Gene expression signature predicts recurrence in lung adenocarcinoma. Clin Cancer Res 13:2946-2954PubMedCrossRefGoogle Scholar
  100. 100.
    Potti A, Mukherjee S, Petersen R et al (2006) A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N Engl J Med 355:570-580PubMedCrossRefGoogle Scholar
  101. 101.
    Chen HY, Yu SL, Chen CH et al (2007) A five-gene signature and clinical outcome in non-small-cell lung cancer. N Engl J Med 356:11-20PubMedCrossRefGoogle Scholar
  102. 102.
    Oshita F, Sekiyama A, Saito H, Yamada K, Noda K, Miyagi Y (2006) Genome-wide cDNA microarray screening of genes related to the benefits of paclitaxel and irinotecan chemotherapy in patients with advanced non-small cell lung cancer. J Exp Ther Oncol 6:49-53PubMedGoogle Scholar
  103. 103.
    Potti A, Dressman HK, Bild A et al (2006) Genomic signatures to guide the use of chemotherapeutics. Nat Med 12:1294-1300PubMedCrossRefGoogle Scholar
  104. 104.
    Zohrabian VM, Nandu H, Gulati N et al (2007) Gene expression profiling of metastatic brain cancer. Oncol Rep 18:321-328PubMedGoogle Scholar
  105. 105.
    Kikuchi T, Daigo Y, Ishikawa N et al (2006) Expression profiles of metastatic brain tumor from lung adenocarcinomas on cDNA microarray. Int J Oncol 28:799-805PubMedGoogle Scholar
  106. 106.
    Shedden K, Taylor JM, Enkemann SA et al (2008) Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study. Nat Med 14:822-827PubMedCrossRefGoogle Scholar
  107. 107.
    Jay C, Nemunaitis J, Chen P, Fulgham P, Tong AW (2007) miRNA profiling for diagnosis and prognosis of human cancer. DNA Cell Biol 26:293-300PubMedCrossRefGoogle Scholar
  108. 108.
    Fabbri M, Croce CM, Calin GA (2008) MicroRNAs. Cancer J 14:1-6PubMedCrossRefGoogle Scholar
  109. 109.
    Yanaihara N, Caplen N, Bowman E et al (2006) Unique microRNA molecular profiles in lung cancer diagnosis and prognosis. Cancer Cell 9:189-198PubMedCrossRefGoogle Scholar
  110. 110.
    Volinia S, Calin GA, Liu CG et al (2006) A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci USA 103:2257-2261PubMedCrossRefGoogle Scholar
  111. 111.
    Yu SL, Chen HY, Chang GC et al (2008) MicroRNA signature predicts survival and relapse in lung cancer. Cancer Cell 13:48-57PubMedCrossRefGoogle Scholar
  112. 112.
    Weiss GJ, Bemis LT, Nakajima E et al (2008) EGFR regulation by microRNA in lung cancer: correlation with clinical response and survival to gefitinib and EGFR expression in cell lines. Ann Oncol 19:1053-1059PubMedCrossRefGoogle Scholar
  113. 113.
    Wistuba II, Behrens C, Virmani AK et al (1999) Allelic losses at chromosome 8p21-23 are early and frequent events in the pathogenesis of lung cancer. Cancer Res 59:1973-1979PubMedGoogle Scholar
  114. 114.
    Jiang F, Yin Z, Caraway NP, Li R, Katz RL (2004) Genomic profiles in stage I primary non small cell lung cancer using comparative genomic hybridization analysis of cDNA microarrays. Neoplasia 6:623-635PubMedCrossRefGoogle Scholar
  115. 115.
    Garnis C, Lockwood WW, Vucic E et al (2006) High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH. Int J Cancer 118:1556-1564PubMedCrossRefGoogle Scholar
  116. 116.
    Callinan PA, Feinberg AP (2006) The emerging science of epigenomics. Hum Mol Genet 15 Spec No 1:R95-R101PubMedCrossRefGoogle Scholar
  117. 117.
    Herman JG, Baylin SB (2003) Gene silencing in cancer in association with promoter hypermethylation. N Engl J Med 349:2042-2054PubMedCrossRefGoogle Scholar
  118. 118.
    Iacobuzio-Donahue CA (2009) Epigenetic changes in cancer. Annu Rev Pathol 4:229-249PubMedCrossRefGoogle Scholar
  119. 119.
    Shames DS, Girard L, Gao B et al (2006) A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. PLoS Med 3:e486PubMedCrossRefGoogle Scholar
  120. 120.
    Tsou JA, Galler JS, Siegmund KD et al (2007) Identification of a panel of sensitive and specific DNA methylation markers for lung adenocarcinoma. Mol Cancer 6:70PubMedCrossRefGoogle Scholar
  121. 121.
    Yanagawa N, Tamura G, Oizumi H et al (2007) Promoter hypermethylation of RASSF1A and RUNX3 genes as an independent prognostic prediction marker in surgically resected non-small cell lung cancers. Lung Cancer 58:131-138PubMedCrossRefGoogle Scholar
  122. 122.
    Brock MV, Hooker CM, Ota-Machida E et al (2008) DNA methylation markers and early recurrence in stage I lung cancer. N Engl J Med 358:1118-1128PubMedCrossRefGoogle Scholar
  123. 123.
    Wilkins-Haug L (1993) The emerging genetic theories of unstable DNA, uniparental disomy, and imprinting. Curr Opin Obstet Gynecol 5:179-185PubMedCrossRefGoogle Scholar
  124. 124.
    Caprioli RM, Farmer TB, Gile J (1997) Molecular imaging of biological samples: localization of peptides and proteins using MALDI-TOF MS. Anal Chem 69:4751-4760PubMedCrossRefGoogle Scholar
  125. 125.
    Yanagisawa K, Shyr Y, Xu BJ et al (2003) Proteomic patterns of tumour subsets in non-small-cell lung cancer. Lancet 362:433-439PubMedCrossRefGoogle Scholar
  126. 126.
    Taguchi F, Solomon B, Gregorc V et al (2007) Mass spectrometry to classify non-small-cell lung cancer patients for clinical outcome after treatment with epidermal growth factor receptor tyrosine kinase inhibitors: a multicohort cross-institutional study. J Natl Cancer Inst 99:838-846PubMedCrossRefGoogle Scholar
  127. 127.
    Bianchi F, Nicassio F, Di Fiore PP (2008) Unbiased vs. biased approaches to the identification of cancer signatures: the case of lung cancer. Cell Cycle 7:729-734PubMedCrossRefGoogle Scholar
  128. 128.
    Colby TV, Wistuba II, Gazdar A (1998) Precursors to pulmonary neoplasia. Adv Anat Pathol 5:205-215PubMedCrossRefGoogle Scholar
  129. 129.
    Kerr KM (2001) Pulmonary preinvasive neoplasia. J Clin Pathol 54:257-271PubMedCrossRefGoogle Scholar
  130. 130.
    Wistuba II, Behrens C, Milchgrub S et al (1999) Sequential molecular abnormalities are involved in the multistage development of squamous cell lung carcinoma. Oncogene 18:643-650PubMedCrossRefGoogle Scholar
  131. 131.
    Belinsky SA, Nikula KJ, Palmisano WA et al (1998) Aberrant methylation of p16(INK4a) is an early event in lung cancer and a potential biomarker for early diagnosis. Proc Natl Acad Sci USA 95:11891-11896PubMedCrossRefGoogle Scholar
  132. 132.
    Wistuba II, Lam S, Behrens C et al (1997) Molecular damage in the bronchial epithelium of current and former smokers. J Natl Cancer Inst 89:1366-1373PubMedCrossRefGoogle Scholar
  133. 133.
    Mao L, Lee JS, Kurie JM et al (1997) Clonal genetic alterations in the lungs of current and former smokers. J Natl Cancer Inst 89:857-862PubMedCrossRefGoogle Scholar
  134. 134.
    Park IW, Wistuba II, Maitra A et al (1999) Multiple clonal abnormalities in the bronchial epithelium of patients with lung cancer. J Natl Cancer Inst 91:1863-1868PubMedCrossRefGoogle Scholar
  135. 135.
    Wistuba II (2005) Histologic evaluation of bronchial squamous lesions: any role in lung cancer risk assessment? Clin Cancer Res 11:1358-1360PubMedCrossRefGoogle Scholar
  136. 136.
    Kitamura H, Kameda Y, Ito T, Hayashi H (1999) Atypical adenomatous hyperplasia of the lung. Implications for the pathogenesis of peripheral lung adenocarcinoma [see comments]. Am J Clin Pathol 111:610-622PubMedGoogle Scholar
  137. 137.
    Osanai M, Igarashi T, Yoshida Y (2001) Unique cellular features in atypical adenomatous hyperplasia of the lung: ultrastructural evidence of its cytodifferentiation. Ultrastruct Pathol 25:367-373PubMedCrossRefGoogle Scholar
  138. 138.
    Westra WH, Baas IO, Hruban RH et al (1996) K-ras oncogene activation in atypical alveolar hyperplasias of the human lung. Cancer Res 56:2224-2228PubMedGoogle Scholar
  139. 139.
    Tominaga M, Sueoka N, Irie K et al (2003) Detection and discrimination of preneoplastic and early stages of lung adenocarcinoma using hmRNP B1, combined with the cell cycle-related markers p16, cyclin D1, and Ki-67. Lung Cancer 40:45-53PubMedCrossRefGoogle Scholar
  140. 140.
    Nakanishi K, Kawai T, Kumaki F, Hiroi S, Mukai M, Ikeda E (2003) Survivin expression in atypical adenomatous hyperplasia of the lung. Am J Clin Pathol 120:712-719PubMedCrossRefGoogle Scholar
  141. 141.
    Tang X, Shigematsu H, Bekele BN et al (2005) EGFR tyrosine kinase domain mutations are detected in histologically normal respiratory epithelium in lung cancer patients. Cancer Res 65:7568-7572PubMedGoogle Scholar
  142. 142.
    Yoshida Y, Shibata T, Kokubu A et al (2005) Mutations of the epidermal growth factor receptor gene in atypical adenomatous hyperplasia and bronchioloalveolar carcinoma of the lung. Lung Cancer 50(1):1-8PubMedCrossRefGoogle Scholar
  143. 143.
    Tang X, Varella-Garcia M, Xavier AC et al (2008) EGFR abnormalities in the pathogenesis and progression of lung adenocarcinomas. Cancer Prev Res 1:404-408CrossRefGoogle Scholar
  144. 144.
    Wistuba I, Gazdar A (2006) Lung cancer prenoplasia. Annu Rev Pathol Mech Dis 1:331-348CrossRefGoogle Scholar

Copyright information

© Humana Press, a part of Springer Science+Business Media, LLC 2010

Authors and Affiliations

  1. 1.Department of Pathology, Unit 85MD Anderson Cancer CenterHoustonUSA

Personalised recommendations