Ion Channels pp 169-202 | Cite as

VDAC, a Channel in the Outer Mitochondrial Membrane

  • Marco Colombini
  • Elizabeth Blachly-Dyson
  • Michael Forte
Chapter
Part of the Ion Channels book series (IC, volume 4)

Abstract

Proteins that form aqueous channels in membranes generate conduction pathways with a variety of shapes and sizes. Perhaps the largest channel-forming protein is the 2-MDa ryanodine receptor while the smallest may be gramicidin. However, the size of the conducting pathway is not correlated with the amount of protein mass needed to make up the structure, as demonstrated by the fact that some of the narrowest conducting pathways are produced by very large amounts of protein (e. g., 0.3 MDa for the Na+/ K+/Ca2+ channel family). In contrast, the focus of this review, the voltage-dependent anion channel (VDAC) of the mitochondrial outer membrane, produces one of the largest aqueous pathways from a single 30-kDa protein. VDAC also demonstrates that functional complexity does not seem to correlate well with the amount of protein used to form a channel. VDAC has a small amount of protein mass but displays complex behavior. It has two voltage-gating processes, can be controlled by metabolites and regulatory proteins, is able to form complexes with other proteins and enzymes, and responds to the protein concentration of the cytoplasm (Colombini, 1994). Thus, many functions are packed into a single, relatively small VDAC protein.

Keywords

Closed State Voltage Dependence Mitochondrial Outer Membrane Voltage Sensor Channel Closure 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Adams, V., and McCabe, E. R. B., 1994, Role of porin-kinase interactions in disease, in: Molecular Biology of Mitochondrial Transport Systems, NATO ASI Series, Vol. 83 (M. Forte and M. Colombini, eds.), Springer-Verlag, Berlin, pp. 357–377.CrossRefGoogle Scholar
  2. Adams, V., Griffin, L., Towbin, J., Gelb, B., Worley, K., and McCabe, E. R. B., 1991, Porin interaction with hexokinase and glycerol kinase: Metabolic microcompartmentation at the outer mitochondrial membrane, Biochem. Med. Metabol. Biol. 45: 271–291.CrossRefGoogle Scholar
  3. Akabas, M. H., Kaufmann, C., Archdeacon, P., and Karlin, A., 1994a, Identification of acetylcholine receptor channel-lining residues in the entire M2 segment of the alpha subunit, Neuron 13: 919–927.PubMedCrossRefGoogle Scholar
  4. Akabas, M. H., Kaufmann, C., Cook, T. A., and Archdeacon, P., 1994b, Amino acid residues lining the chloride channel of the cystic fibrosis transmembrane conductance regulator, J. Biol. Chem. 269: 14865–14868.PubMedGoogle Scholar
  5. Benz, R., Kottke, M., and Brdiczka, D., 1990, The cationically selective state of the mitochondrial outer membrane pore: A study with intact mitochondria and reconstituted mitochondrial porin, Biochim. Biophys. Acta 1022: 311–318.PubMedCrossRefGoogle Scholar
  6. Blachly-Dyson, E., Peng, S., Colombini, M., and Forte, M., 1989, Probing the structure of the mitochondrial channel, VDAC., by site-directed mutagenesis: A progress report, J. Bioenerg. Biomembr. 21: 471–483.PubMedCrossRefGoogle Scholar
  7. Blachly-Dyson, E., Peng, S., Colombini, M., and Forte, M., 1990, Selectivity changes in site-directed mutants of the VDAC ion channel: Structural implications, Science 247: 1233–1236.PubMedCrossRefGoogle Scholar
  8. Blachly-Dyson, E., Zambrowicz, E. B., Yu, W.-H., Adams, V., McCabe, E. R. B., Adelman, J., Colombini, M., and Forte, M., 1993, Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel, J. Biol. Chem. 268: 1835–1841.PubMedGoogle Scholar
  9. Blachly-Dyson, E., Baldini, A., Litt, M., McCabe, E. R. B., and Forte, M., 1994, Human genes encoding the voltage-dependent anion channel (VDAC) of the outer mitochondrial membrane: Mapping and identification of two new isoforms, Genomics 20: 62–67.PubMedCrossRefGoogle Scholar
  10. Blumenthal, A., Kahn, K., Beja, O., Galun, E., Colombini, M., and Breiman, A., 1993, Purification and characterization of the voltage-dependent anion-selective channel protein from wheat mitochondrial membranes, Plant Physiol. 101: 579–587.PubMedGoogle Scholar
  11. Brdiczka, D., Kaldis, P., and Wallimann, T., 1994, In vitro complex formation between the octamer of mitochondrial creatine kinase and porin, J. Biol. Chem. 269: 27640–47644.PubMedGoogle Scholar
  12. Bureau, M. H., Khrestchatisky, M., Heeren, M. A., Zambrowicz, E. B., Kim, H., Grisar, T. M., Colombini, M., Tobin, A. J., and Olsen, T. W., 1992, Isolation and cloning of a voltage-dependent anion channel-like Mr36,000 polypeptide from mammalian brain, J. Biol Chem. 267: 8679–8684.PubMedGoogle Scholar
  13. Colombini, M., 1979, A candidate for the permeability pathway of the outer mitochondrial membrane, Nature 279: 643–645.PubMedCrossRefGoogle Scholar
  14. Colombini, M., 1980a, Pore size and properties of channels from mitochondria isolated from Neurospora crassa, J. Membr. Biol. 53: 79–84.CrossRefGoogle Scholar
  15. Colombini, M., 1980b, Structure and mode of action of a voltage-dependent anion-selective channel (VDAC) located in the outer mitochondrial membrane, Ann. N.Y. Acad. Sci. 341: 552–563.PubMedCrossRefGoogle Scholar
  16. Colombini, M., 1989, Voltage gating in the mitochondrial channel, J. Membr. Biol 111: 103–111.PubMedCrossRefGoogle Scholar
  17. Colombini, M., 1994, Anion channels in the mitochondrial outer membrane, in: Current Topics in Membranes, Vol. 42 (W. Guggino, ed.), Academic Press, San Diego, pp. 73–101.Google Scholar
  18. Colombini, M., Yeung, C. L., Tung, J., and König, T., 1987, The mitochondrial outer membrane channel, VDAC., is regulated by a synthetic polyanion, Biochim. Biophys. Acta 905: 279–286.PubMedCrossRefGoogle Scholar
  19. Colombini, M., Holden, M. J., and Mangan, P. S., 1989, Modulation of the mitochondrial channel VDAC by a variety of agents, in: Anion Carriers of Mitochondrial Membranes (A. Azzi et al., eds.), Springer-Verlag, Berlin, pp. 215–224.CrossRefGoogle Scholar
  20. Craigen, W. J., Lovell, R. S., and Sampson, M. J., 1994, Structure and expression of mouse mitochondrial voltage dependent anion channel genes, Am. J. Hum. Genet. 55: (Abstr. 3) supplement.Google Scholar
  21. dePinto, V, Jamal, J. A., and Palmieri, F., 1993, Location of the dicyclohexylcarbodiimide-reactive glutamate residue in the bovine heart mitochondrial porin, J. Biol. Chem. 268: 12977–12982.Google Scholar
  22. Dermietzel, R., Hwang, T.-K., Buettner, R., Hofer, A., Dotzler, E., Kremer, M., Deutzmann, R., Thinnes, F. P., Fishman, G. I., Spray, D. C., and Siemen, D., 1994, Cloning and in situ localization of a brain-derived porin that constitutes a large-conductance anion channel in astrocytic plasma membranes, Proc. Natl. Acad. Sci. USA 91: 499–503.PubMedCrossRefGoogle Scholar
  23. Dill, E. T., Holden, M. J., and Colombini, M., 1987, Voltage gating in VDAC is markedly inhibited by micromolar quantities of aluminum, J. Membr. Biol. 99: 187–196.PubMedCrossRefGoogle Scholar
  24. Doring, C., and Colombini, M., 1985, The mitochondrial voltage-dependent channel, VDAC., is modified asymmetrically by succinic anhydride, J. Membr. Biol. 83: 87–94.PubMedCrossRefGoogle Scholar
  25. Durkin, J. T., Koeppe II, R. E., and Anderson, O. S., 1990, Energetics of gramicidin hybrid channel formation: A test for structural equivalence. Side-chain substitutions in the native sequence, J. Mol. Biol. 211: 221–234.PubMedCrossRefGoogle Scholar
  26. Eisenman, G., and Krasne, S., 1975, The ion selectivity of carrier molecules, membranes and enzymes, in: MTP International Review of Science, Biochemistry Series, Vol. 2 (C. F. Fox, ed.), Butterworths, London, pp. 27–59.Google Scholar
  27. Fiek, C., Benz, R., Roos, N., and Brdiczka, D., 1982, Evidence for identity between the hexokinase-binding protein and the mitochondrial porin in the outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 688: 429–440.PubMedCrossRefGoogle Scholar
  28. Finkelstein, A., 1985, The ubiquitous presence of channels with wide lumen and their gating by voltage, Ann. N.Y. Acad. Sci. 456: 26–32.PubMedCrossRefGoogle Scholar
  29. Fischer, K., Weber, A., Brink, S., Arbinger, B., Schünemann, D., Borchert, S., Heldt, H. W., Popp, B., Benz, R., Link, T.-A., Eckerskorn, C., and Flügge, U., 1994, Porins from plants: Molecular cloning and functional characterization of two new members of the porin family, J. Biol. Chem. 269: 25754–25760.PubMedGoogle Scholar
  30. Florke, H., Thinnes, F. P., Winkelbach, H., Stadtmuller, U., Paetzold, G., Morys-Wortmann, C., Hesse, D., Sternbach, H., Zimmermann, B., and Kaufmann-Kolle, P., 1994, Channel active mammalian porin, purified from crude membrane fractions of B lymphocytes and bovine skeletal muscle, reversibly binds adenosine triphosphate (ATP), Biol. Chem. Hoppe-Seyler 375: 513–520.PubMedCrossRefGoogle Scholar
  31. Gellerich, F. N., Wagner, M., Kapischke, M., Wicker, U., and Brdiczka, D., 1993, Effect of macromolecules on the regulation of the mitochondrial outer membrane pore and the activity of adenylate kinase in the inter-membrane space, Biochim. Biophys. Acta 1142: 217–227.PubMedCrossRefGoogle Scholar
  32. Ha, H., Hajek, P., Bedwell, D. M., and Burrows, P. D., 1993, A mitochondrial porin cDNA predicts the existence of multiple human porins, J. Biol Chem. 268: 12143–12149.PubMedGoogle Scholar
  33. Heins, L., Mentzel, H., Schmid, A., Benz, R., and Schmitz, U. K., 1994, Biochemical, molecular and functional characterization of two different porins from potato mitochondria, J. Biol. Chem. 264: 26402–26410.Google Scholar
  34. Holden, M. J., and Colombini, M., 1988, The mitochondrial outer membrane channel, VDAC., is modulated by a soluble protein, FEBS Lett. 241: 105–109.PubMedCrossRefGoogle Scholar
  35. Holden, M. J., and Colombini, M., 1993, The outer mitochondrial membrane channel, VDAC., is modulated by a protein localized in the intermembrane space, Biochim. Biophys. Acta 1144: 396–402.PubMedCrossRefGoogle Scholar
  36. Kabir, F., and Wilson, J. E., 1994, Mitochondrial hexokinase in brain: Coexistence of forms differing in sensitivity to solubilization by glucose-6-phosphate on the same mitochondria, Arch. Biochem. Biophys. 310: 410–416.PubMedCrossRefGoogle Scholar
  37. Kayser, H., Kratzin, H. D., Thinnes, F. P., Götz, H., Schmidt, W. E., Eckart, K., and Hilschmann, N., 1989, Charakterisierung und primärstruktur eines 31-kDa-porins aus menschlichen B-Lumphozyten (porin 31HL), Biol. Chem. Hoppe-Seyler 370: 1265–1278.PubMedGoogle Scholar
  38. Lee, A.-C., Zizi, M., and Colombini, M., 1994, β-NADH decreases the permeability of the mitochondrial outer membrane to ADP by a factor of 6, J. Biol. Chem. 269: 30974–30980.PubMedGoogle Scholar
  39. Linden, M., and Gellerfors, P., 1983, Hydrodynamic properties of porin isolated from outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 736: 125–129.PubMedCrossRefGoogle Scholar
  40. Linden, M., Gellerfors, P., and Nelson, B. D., 1982, Pore protein and the hexokinase-binding protein from the outer membrane of rat liver mitochondria are identical, FEBS Lett. 141: 189–192.PubMedCrossRefGoogle Scholar
  41. Liu, M. Y., and Colombini, M., 1991, Voltage gating of the mitochondrial outer membrane channel VDAC is regulated by a very conserved protein, Am. J. Physiol. 260: C371–C374.PubMedGoogle Scholar
  42. Liu, M. Y., and Colombini, M., 1992a, Regulation of mitochondrial respiration by controlling the permeability of the outer membrane through the mitochondrial channel, VDAC., Biochim. Biophys. Acta 1098: 255–260.PubMedCrossRefGoogle Scholar
  43. Liu, M. Y., and Colombini, M., 1992b, A soluble protein increases the voltage dependence of the mitochondrial channel, VDAC., J. Bioenerg. Biomembr. 24: 41–46.PubMedCrossRefGoogle Scholar
  44. Liu, M. Y., Torgrimson, A., and Colombini, M., 1993, Characterization and partial purification of the VDAC-channel-modulating protein from calf liver mitochondria, Biochim. Biophys. Acta 1185: 203–212.Google Scholar
  45. Mangan, P., and Colombini, M., 1987, Ultrasteep voltage dependence in a membrane channel, Proc. Natl. Acad. Sci. USA 84: 4896–4900.PubMedCrossRefGoogle Scholar
  46. Mannella, C. A., 1986, Mitochondrial outer membrane channel (VDAC., porin): Two-dimensional crystals from Neurospora, Methods Enzymol. 125: 595–610.PubMedCrossRefGoogle Scholar
  47. Mannella, C. A., 1987, Electron microscopy and image analysis of the mitochondrial outer membrane channel, VDAC., J. Bioenerg. Biomembr. 19: 329–340.PubMedCrossRefGoogle Scholar
  48. Mannella, C. A., 1990, Structural analysis of mitochondrial pores, Experientia 46: 137–145.PubMedCrossRefGoogle Scholar
  49. Mannella, C. A., and Guo, X. W., 1990, Interaction between the VDAC channel and a polyanionic effector, Biophys. J. 57: 23–31.PubMedCrossRefGoogle Scholar
  50. Mannella, C. A., Forte, M., and Colombini, M., 1992, Toward the molecular structure of the mitochondrial channel, VDAC., J. Bioenerg. Biomembr. 24: 7–19.PubMedCrossRefGoogle Scholar
  51. Müller, G., Korndörfer, A., Kornak, U., and Malaisse, W. J., 1994, Porin proteins in mitochondria from rat pancreatic islet cells and white adipocytes: Identification and regulation of hexokinase binding by the sulfonylurea glimepiride, Arch. Biochem. Biophys. 308: 8–23 (erratum: Ibid. 313: 382).PubMedCrossRefGoogle Scholar
  52. Nakashima, R. A., Mangan, P. S., Colombini, M., and Pedersen, P. L., 1986, Hexokinase receptor complex in hepatoma mitochondria: Evidence from N, N’-dicyclohexylcarbodiimide-labeling studies for the involvement of the pore-forming protein VDAC., Biochemistry 25: 1015–1021.PubMedCrossRefGoogle Scholar
  53. Peng, S., Blachly-Dyson, E., Forte, M., and Colombini, M., 1992a, Large scale rearrangement of protein domains is associated with voltage gating of the VDAC channel, Biophys. J. 62: 123–135.PubMedCrossRefGoogle Scholar
  54. Peng, S., Blachly-Dyson, E., Forte, M., and Colombini, M., 1992b, Determination of the number of polypeptide subunits in a functional VDAC channel from Saccharomyces cerevisiae, J. Bioenerg. Biomembr. 24: 27–31.PubMedCrossRefGoogle Scholar
  55. Pfaller, R., Freitag, H., Harmey, M. A., Benz, R., and Neupert, W., 1985, A water-soluble form of porin from the mitochondrial outer membrane of Neurospora crassa, J. Biol. Chem. 260: 8188–8193.PubMedGoogle Scholar
  56. Rasschaert, J., and Malaisse, W. J., 1990, Hexose metabolism in pancreatic islets: Preferential utilization of mitochondrial ATP for glucose phosphorylation, Biochim. Biophys. Acta 1015: 353–360.PubMedCrossRefGoogle Scholar
  57. Rojo, M., Hovius, R., Demel, R. A., Nicolay, K., and Willimann, T., 1991, Mitochondrial creatine kinase mediates contact formation between mitochondrial membranes, J. Biol. Chem. 266: 20290–20295.PubMedGoogle Scholar
  58. Roos, N., Benz, R., and Brdiczka, D., 1982, Identification and characterization of the pore-forming protein in the outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 686: 204–214.PubMedCrossRefGoogle Scholar
  59. Schein, S. J., Colombini, M., and Finkelstein, A., 1976, Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from Paramecium mitochondria, J. Membr. Biol. 30: 99–120.PubMedCrossRefGoogle Scholar
  60. Schlegel, J., Wyss, M., Schürch, U., Schnyder, T., Quest, A., Wegmann, G., Eppenberger, H. M., and Wallimann, T., 1988, Mitochondrial creatine kinase from cardiac muscle and brain are two distinct isoenzymes but both form octameric molecules, J. Biol. Chem. 263: 16963–16969.PubMedGoogle Scholar
  61. Song, J. M., and Colombini, M., 1996, Indications of a common folding pattern for VDAC channels from all sources, J. Bioenerg. Biomembr., in press.Google Scholar
  62. Teorell, T., 1953, Transport processes and electrical phenomena in ionic membranes, Prog. Biophys. Biophys. Chem. 3: 305–369.Google Scholar
  63. Thomas, L., Kocsis, E., Colombini, M., Erbe, E., Trus, B. L., and Steven, A. C., 1991, Surface topography and molecular stoichiometry of the mitochondrial channel, VDAC., in crystalline arrays, J. Struct. Biol. 106: 161–171.PubMedCrossRefGoogle Scholar
  64. Thomas, L., Blachly-Dyson, E., Colombini, M., and Forte, M., 1993, Mapping of residues forming the voltage sensor of the VDAC channel, Proc. Natl. Acad. Sci. USA 90: 5446–5449.PubMedCrossRefGoogle Scholar
  65. Troll, H., Malchow, D., Müller-Taubenberger, A., Humbel, B., Lottspeich, F., Ecke, M., Gerisch, G., Schmid, A., and Benz, R., 1992, Purification, functional characterization, and cDNA sequencing of mitochondrial porin from dictyostelium discoideum, J. Biol. Chem. 267: 21072–21079.PubMedGoogle Scholar
  66. Unwin, P. N. T., and Zampighi, G., 1980, Structure of the junction between communicating cells, Nature 283: 545–549.PubMedCrossRefGoogle Scholar
  67. Vodyanoy, I., Bezrukov, S. M., and Colombini, M., 1992, Measurement of ion channel access resistance, Biophys. J. 61: A114.Google Scholar
  68. Weiss, M. S., Wacker, T., Weckesser, J., Weite, W, and Schulz, G. E., 1990, The three-dimensional structure of porin from Rhodobacter capsulatus at 3 Å resolution, FEBS Lett. 267: 268–272.PubMedCrossRefGoogle Scholar
  69. Xie, G., and Wilson, J. E., 1990, Rat brain hexokinase: The hydrophobic N-terminus of the mitochondrially bound enzyme is inserted in the lipid bilayer, Arch. Biochem. Biophys. 276: 285–293.PubMedCrossRefGoogle Scholar
  70. Yellen, G. M., Jurman, M., Abramson, T., and MacKinnon, R., 1991, Mutations affecting internal TEA blockade identify the probable pore-forming region of a K+ channel, Science 251: 939–942.PubMedCrossRefGoogle Scholar
  71. Yilmaz, M. T., Sener, A., and Malaisse, W. J., 1987, Glycerol phosphorylation and oxidation in pancreatic islets, Mol. Cell. Endocrinol. 52: 251–256.PubMedCrossRefGoogle Scholar
  72. Zalman, L. S., Nikaido, H., and Kagawa, Y., 1980, Mitochondrial outer membrane contains a protein producing nonspecific diffusion channels, J. Biol. Chem. 255: 1771–1774.PubMedGoogle Scholar
  73. Zambrowicz, E. B., and Colombini, M., 1993, Zero-current potentials in a large membrane channel: A simple theory accounts for complex behavior, Biophys. J. 65: 1093–1100.PubMedCrossRefGoogle Scholar
  74. Zhang, D. W, and Colombini, M., 1989, Inhibition by aluminum hydroxide of the voltage-dependent closure of the mitochondrial channel, VDAC., Biochim. Biophys. Acta 991: 68–78.PubMedCrossRefGoogle Scholar
  75. Zhang, D. W, and Colombini, M., 1990, Group IIIA-metal hydroxides indirectly neutralize the voltage sensor of the voltage-dependent mitochondrial channel, VDAC., by interacting with a dynamic binding site, Biochim. Biophys. Acta 1025: 127–134.PubMedCrossRefGoogle Scholar
  76. Zimmerberg, J., and Parsegian, V. A., 1986, Polymer inaccessible volume changes during opening and closing of a voltage-dependent ionic channel, Nature 323: 36–39.PubMedCrossRefGoogle Scholar
  77. Zizi, M., Forte, M., Blachly-Dyson, E., and Colombini, M., 1994, NADH regulates the gating of VDAC., the mitochondrial outer membrane channel, J. Biol. Chem. 269: 1614–1616.PubMedGoogle Scholar
  78. Zizi, M., Thomas, L., Blachly-Dyson, E., Forte, M., and Colombini, M., 1995, Oriented channel insertion reveals the motion of a transmembrane beta strand during voltage gating of VDAC., J. Membr. Biol. 144: 121–129.PubMedGoogle Scholar

Copyright information

© Springer Science+Business Media New York 1996

Authors and Affiliations

  • Marco Colombini
    • 1
  • Elizabeth Blachly-Dyson
    • 2
  • Michael Forte
    • 2
  1. 1.Department of ZoologyUniversity of MarylandCollege ParkUSA
  2. 2.Vollum InstituteOregon Health Sciences UniversityPortlandUSA

Personalised recommendations