Ion Channels pp 169-202 | Cite as
VDAC, a Channel in the Outer Mitochondrial Membrane
Abstract
Proteins that form aqueous channels in membranes generate conduction pathways with a variety of shapes and sizes. Perhaps the largest channel-forming protein is the 2-MDa ryanodine receptor while the smallest may be gramicidin. However, the size of the conducting pathway is not correlated with the amount of protein mass needed to make up the structure, as demonstrated by the fact that some of the narrowest conducting pathways are produced by very large amounts of protein (e. g., 0.3 MDa for the Na+/ K+/Ca2+ channel family). In contrast, the focus of this review, the voltage-dependent anion channel (VDAC) of the mitochondrial outer membrane, produces one of the largest aqueous pathways from a single 30-kDa protein. VDAC also demonstrates that functional complexity does not seem to correlate well with the amount of protein used to form a channel. VDAC has a small amount of protein mass but displays complex behavior. It has two voltage-gating processes, can be controlled by metabolites and regulatory proteins, is able to form complexes with other proteins and enzymes, and responds to the protein concentration of the cytoplasm (Colombini, 1994). Thus, many functions are packed into a single, relatively small VDAC protein.
Keywords
Closed State Voltage Dependence Mitochondrial Outer Membrane Voltage Sensor Channel ClosurePreview
Unable to display preview. Download preview PDF.
References
- Adams, V., and McCabe, E. R. B., 1994, Role of porin-kinase interactions in disease, in: Molecular Biology of Mitochondrial Transport Systems, NATO ASI Series, Vol. 83 (M. Forte and M. Colombini, eds.), Springer-Verlag, Berlin, pp. 357–377.CrossRefGoogle Scholar
- Adams, V., Griffin, L., Towbin, J., Gelb, B., Worley, K., and McCabe, E. R. B., 1991, Porin interaction with hexokinase and glycerol kinase: Metabolic microcompartmentation at the outer mitochondrial membrane, Biochem. Med. Metabol. Biol. 45: 271–291.CrossRefGoogle Scholar
- Akabas, M. H., Kaufmann, C., Archdeacon, P., and Karlin, A., 1994a, Identification of acetylcholine receptor channel-lining residues in the entire M2 segment of the alpha subunit, Neuron 13: 919–927.PubMedCrossRefGoogle Scholar
- Akabas, M. H., Kaufmann, C., Cook, T. A., and Archdeacon, P., 1994b, Amino acid residues lining the chloride channel of the cystic fibrosis transmembrane conductance regulator, J. Biol. Chem. 269: 14865–14868.PubMedGoogle Scholar
- Benz, R., Kottke, M., and Brdiczka, D., 1990, The cationically selective state of the mitochondrial outer membrane pore: A study with intact mitochondria and reconstituted mitochondrial porin, Biochim. Biophys. Acta 1022: 311–318.PubMedCrossRefGoogle Scholar
- Blachly-Dyson, E., Peng, S., Colombini, M., and Forte, M., 1989, Probing the structure of the mitochondrial channel, VDAC., by site-directed mutagenesis: A progress report, J. Bioenerg. Biomembr. 21: 471–483.PubMedCrossRefGoogle Scholar
- Blachly-Dyson, E., Peng, S., Colombini, M., and Forte, M., 1990, Selectivity changes in site-directed mutants of the VDAC ion channel: Structural implications, Science 247: 1233–1236.PubMedCrossRefGoogle Scholar
- Blachly-Dyson, E., Zambrowicz, E. B., Yu, W.-H., Adams, V., McCabe, E. R. B., Adelman, J., Colombini, M., and Forte, M., 1993, Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel, J. Biol. Chem. 268: 1835–1841.PubMedGoogle Scholar
- Blachly-Dyson, E., Baldini, A., Litt, M., McCabe, E. R. B., and Forte, M., 1994, Human genes encoding the voltage-dependent anion channel (VDAC) of the outer mitochondrial membrane: Mapping and identification of two new isoforms, Genomics 20: 62–67.PubMedCrossRefGoogle Scholar
- Blumenthal, A., Kahn, K., Beja, O., Galun, E., Colombini, M., and Breiman, A., 1993, Purification and characterization of the voltage-dependent anion-selective channel protein from wheat mitochondrial membranes, Plant Physiol. 101: 579–587.PubMedGoogle Scholar
- Brdiczka, D., Kaldis, P., and Wallimann, T., 1994, In vitro complex formation between the octamer of mitochondrial creatine kinase and porin, J. Biol. Chem. 269: 27640–47644.PubMedGoogle Scholar
- Bureau, M. H., Khrestchatisky, M., Heeren, M. A., Zambrowicz, E. B., Kim, H., Grisar, T. M., Colombini, M., Tobin, A. J., and Olsen, T. W., 1992, Isolation and cloning of a voltage-dependent anion channel-like Mr36,000 polypeptide from mammalian brain, J. Biol Chem. 267: 8679–8684.PubMedGoogle Scholar
- Colombini, M., 1979, A candidate for the permeability pathway of the outer mitochondrial membrane, Nature 279: 643–645.PubMedCrossRefGoogle Scholar
- Colombini, M., 1980a, Pore size and properties of channels from mitochondria isolated from Neurospora crassa, J. Membr. Biol. 53: 79–84.CrossRefGoogle Scholar
- Colombini, M., 1980b, Structure and mode of action of a voltage-dependent anion-selective channel (VDAC) located in the outer mitochondrial membrane, Ann. N.Y. Acad. Sci. 341: 552–563.PubMedCrossRefGoogle Scholar
- Colombini, M., 1989, Voltage gating in the mitochondrial channel, J. Membr. Biol 111: 103–111.PubMedCrossRefGoogle Scholar
- Colombini, M., 1994, Anion channels in the mitochondrial outer membrane, in: Current Topics in Membranes, Vol. 42 (W. Guggino, ed.), Academic Press, San Diego, pp. 73–101.Google Scholar
- Colombini, M., Yeung, C. L., Tung, J., and König, T., 1987, The mitochondrial outer membrane channel, VDAC., is regulated by a synthetic polyanion, Biochim. Biophys. Acta 905: 279–286.PubMedCrossRefGoogle Scholar
- Colombini, M., Holden, M. J., and Mangan, P. S., 1989, Modulation of the mitochondrial channel VDAC by a variety of agents, in: Anion Carriers of Mitochondrial Membranes (A. Azzi et al., eds.), Springer-Verlag, Berlin, pp. 215–224.CrossRefGoogle Scholar
- Craigen, W. J., Lovell, R. S., and Sampson, M. J., 1994, Structure and expression of mouse mitochondrial voltage dependent anion channel genes, Am. J. Hum. Genet. 55: (Abstr. 3) supplement.Google Scholar
- dePinto, V, Jamal, J. A., and Palmieri, F., 1993, Location of the dicyclohexylcarbodiimide-reactive glutamate residue in the bovine heart mitochondrial porin, J. Biol. Chem. 268: 12977–12982.Google Scholar
- Dermietzel, R., Hwang, T.-K., Buettner, R., Hofer, A., Dotzler, E., Kremer, M., Deutzmann, R., Thinnes, F. P., Fishman, G. I., Spray, D. C., and Siemen, D., 1994, Cloning and in situ localization of a brain-derived porin that constitutes a large-conductance anion channel in astrocytic plasma membranes, Proc. Natl. Acad. Sci. USA 91: 499–503.PubMedCrossRefGoogle Scholar
- Dill, E. T., Holden, M. J., and Colombini, M., 1987, Voltage gating in VDAC is markedly inhibited by micromolar quantities of aluminum, J. Membr. Biol. 99: 187–196.PubMedCrossRefGoogle Scholar
- Doring, C., and Colombini, M., 1985, The mitochondrial voltage-dependent channel, VDAC., is modified asymmetrically by succinic anhydride, J. Membr. Biol. 83: 87–94.PubMedCrossRefGoogle Scholar
- Durkin, J. T., Koeppe II, R. E., and Anderson, O. S., 1990, Energetics of gramicidin hybrid channel formation: A test for structural equivalence. Side-chain substitutions in the native sequence, J. Mol. Biol. 211: 221–234.PubMedCrossRefGoogle Scholar
- Eisenman, G., and Krasne, S., 1975, The ion selectivity of carrier molecules, membranes and enzymes, in: MTP International Review of Science, Biochemistry Series, Vol. 2 (C. F. Fox, ed.), Butterworths, London, pp. 27–59.Google Scholar
- Fiek, C., Benz, R., Roos, N., and Brdiczka, D., 1982, Evidence for identity between the hexokinase-binding protein and the mitochondrial porin in the outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 688: 429–440.PubMedCrossRefGoogle Scholar
- Finkelstein, A., 1985, The ubiquitous presence of channels with wide lumen and their gating by voltage, Ann. N.Y. Acad. Sci. 456: 26–32.PubMedCrossRefGoogle Scholar
- Fischer, K., Weber, A., Brink, S., Arbinger, B., Schünemann, D., Borchert, S., Heldt, H. W., Popp, B., Benz, R., Link, T.-A., Eckerskorn, C., and Flügge, U., 1994, Porins from plants: Molecular cloning and functional characterization of two new members of the porin family, J. Biol. Chem. 269: 25754–25760.PubMedGoogle Scholar
- Florke, H., Thinnes, F. P., Winkelbach, H., Stadtmuller, U., Paetzold, G., Morys-Wortmann, C., Hesse, D., Sternbach, H., Zimmermann, B., and Kaufmann-Kolle, P., 1994, Channel active mammalian porin, purified from crude membrane fractions of B lymphocytes and bovine skeletal muscle, reversibly binds adenosine triphosphate (ATP), Biol. Chem. Hoppe-Seyler 375: 513–520.PubMedCrossRefGoogle Scholar
- Gellerich, F. N., Wagner, M., Kapischke, M., Wicker, U., and Brdiczka, D., 1993, Effect of macromolecules on the regulation of the mitochondrial outer membrane pore and the activity of adenylate kinase in the inter-membrane space, Biochim. Biophys. Acta 1142: 217–227.PubMedCrossRefGoogle Scholar
- Ha, H., Hajek, P., Bedwell, D. M., and Burrows, P. D., 1993, A mitochondrial porin cDNA predicts the existence of multiple human porins, J. Biol Chem. 268: 12143–12149.PubMedGoogle Scholar
- Heins, L., Mentzel, H., Schmid, A., Benz, R., and Schmitz, U. K., 1994, Biochemical, molecular and functional characterization of two different porins from potato mitochondria, J. Biol. Chem. 264: 26402–26410.Google Scholar
- Holden, M. J., and Colombini, M., 1988, The mitochondrial outer membrane channel, VDAC., is modulated by a soluble protein, FEBS Lett. 241: 105–109.PubMedCrossRefGoogle Scholar
- Holden, M. J., and Colombini, M., 1993, The outer mitochondrial membrane channel, VDAC., is modulated by a protein localized in the intermembrane space, Biochim. Biophys. Acta 1144: 396–402.PubMedCrossRefGoogle Scholar
- Kabir, F., and Wilson, J. E., 1994, Mitochondrial hexokinase in brain: Coexistence of forms differing in sensitivity to solubilization by glucose-6-phosphate on the same mitochondria, Arch. Biochem. Biophys. 310: 410–416.PubMedCrossRefGoogle Scholar
- Kayser, H., Kratzin, H. D., Thinnes, F. P., Götz, H., Schmidt, W. E., Eckart, K., and Hilschmann, N., 1989, Charakterisierung und primärstruktur eines 31-kDa-porins aus menschlichen B-Lumphozyten (porin 31HL), Biol. Chem. Hoppe-Seyler 370: 1265–1278.PubMedGoogle Scholar
- Lee, A.-C., Zizi, M., and Colombini, M., 1994, β-NADH decreases the permeability of the mitochondrial outer membrane to ADP by a factor of 6, J. Biol. Chem. 269: 30974–30980.PubMedGoogle Scholar
- Linden, M., and Gellerfors, P., 1983, Hydrodynamic properties of porin isolated from outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 736: 125–129.PubMedCrossRefGoogle Scholar
- Linden, M., Gellerfors, P., and Nelson, B. D., 1982, Pore protein and the hexokinase-binding protein from the outer membrane of rat liver mitochondria are identical, FEBS Lett. 141: 189–192.PubMedCrossRefGoogle Scholar
- Liu, M. Y., and Colombini, M., 1991, Voltage gating of the mitochondrial outer membrane channel VDAC is regulated by a very conserved protein, Am. J. Physiol. 260: C371–C374.PubMedGoogle Scholar
- Liu, M. Y., and Colombini, M., 1992a, Regulation of mitochondrial respiration by controlling the permeability of the outer membrane through the mitochondrial channel, VDAC., Biochim. Biophys. Acta 1098: 255–260.PubMedCrossRefGoogle Scholar
- Liu, M. Y., and Colombini, M., 1992b, A soluble protein increases the voltage dependence of the mitochondrial channel, VDAC., J. Bioenerg. Biomembr. 24: 41–46.PubMedCrossRefGoogle Scholar
- Liu, M. Y., Torgrimson, A., and Colombini, M., 1993, Characterization and partial purification of the VDAC-channel-modulating protein from calf liver mitochondria, Biochim. Biophys. Acta 1185: 203–212.Google Scholar
- Mangan, P., and Colombini, M., 1987, Ultrasteep voltage dependence in a membrane channel, Proc. Natl. Acad. Sci. USA 84: 4896–4900.PubMedCrossRefGoogle Scholar
- Mannella, C. A., 1986, Mitochondrial outer membrane channel (VDAC., porin): Two-dimensional crystals from Neurospora, Methods Enzymol. 125: 595–610.PubMedCrossRefGoogle Scholar
- Mannella, C. A., 1987, Electron microscopy and image analysis of the mitochondrial outer membrane channel, VDAC., J. Bioenerg. Biomembr. 19: 329–340.PubMedCrossRefGoogle Scholar
- Mannella, C. A., 1990, Structural analysis of mitochondrial pores, Experientia 46: 137–145.PubMedCrossRefGoogle Scholar
- Mannella, C. A., and Guo, X. W., 1990, Interaction between the VDAC channel and a polyanionic effector, Biophys. J. 57: 23–31.PubMedCrossRefGoogle Scholar
- Mannella, C. A., Forte, M., and Colombini, M., 1992, Toward the molecular structure of the mitochondrial channel, VDAC., J. Bioenerg. Biomembr. 24: 7–19.PubMedCrossRefGoogle Scholar
- Müller, G., Korndörfer, A., Kornak, U., and Malaisse, W. J., 1994, Porin proteins in mitochondria from rat pancreatic islet cells and white adipocytes: Identification and regulation of hexokinase binding by the sulfonylurea glimepiride, Arch. Biochem. Biophys. 308: 8–23 (erratum: Ibid. 313: 382).PubMedCrossRefGoogle Scholar
- Nakashima, R. A., Mangan, P. S., Colombini, M., and Pedersen, P. L., 1986, Hexokinase receptor complex in hepatoma mitochondria: Evidence from N, N’-dicyclohexylcarbodiimide-labeling studies for the involvement of the pore-forming protein VDAC., Biochemistry 25: 1015–1021.PubMedCrossRefGoogle Scholar
- Peng, S., Blachly-Dyson, E., Forte, M., and Colombini, M., 1992a, Large scale rearrangement of protein domains is associated with voltage gating of the VDAC channel, Biophys. J. 62: 123–135.PubMedCrossRefGoogle Scholar
- Peng, S., Blachly-Dyson, E., Forte, M., and Colombini, M., 1992b, Determination of the number of polypeptide subunits in a functional VDAC channel from Saccharomyces cerevisiae, J. Bioenerg. Biomembr. 24: 27–31.PubMedCrossRefGoogle Scholar
- Pfaller, R., Freitag, H., Harmey, M. A., Benz, R., and Neupert, W., 1985, A water-soluble form of porin from the mitochondrial outer membrane of Neurospora crassa, J. Biol. Chem. 260: 8188–8193.PubMedGoogle Scholar
- Rasschaert, J., and Malaisse, W. J., 1990, Hexose metabolism in pancreatic islets: Preferential utilization of mitochondrial ATP for glucose phosphorylation, Biochim. Biophys. Acta 1015: 353–360.PubMedCrossRefGoogle Scholar
- Rojo, M., Hovius, R., Demel, R. A., Nicolay, K., and Willimann, T., 1991, Mitochondrial creatine kinase mediates contact formation between mitochondrial membranes, J. Biol. Chem. 266: 20290–20295.PubMedGoogle Scholar
- Roos, N., Benz, R., and Brdiczka, D., 1982, Identification and characterization of the pore-forming protein in the outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 686: 204–214.PubMedCrossRefGoogle Scholar
- Schein, S. J., Colombini, M., and Finkelstein, A., 1976, Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from Paramecium mitochondria, J. Membr. Biol. 30: 99–120.PubMedCrossRefGoogle Scholar
- Schlegel, J., Wyss, M., Schürch, U., Schnyder, T., Quest, A., Wegmann, G., Eppenberger, H. M., and Wallimann, T., 1988, Mitochondrial creatine kinase from cardiac muscle and brain are two distinct isoenzymes but both form octameric molecules, J. Biol. Chem. 263: 16963–16969.PubMedGoogle Scholar
- Song, J. M., and Colombini, M., 1996, Indications of a common folding pattern for VDAC channels from all sources, J. Bioenerg. Biomembr., in press.Google Scholar
- Teorell, T., 1953, Transport processes and electrical phenomena in ionic membranes, Prog. Biophys. Biophys. Chem. 3: 305–369.Google Scholar
- Thomas, L., Kocsis, E., Colombini, M., Erbe, E., Trus, B. L., and Steven, A. C., 1991, Surface topography and molecular stoichiometry of the mitochondrial channel, VDAC., in crystalline arrays, J. Struct. Biol. 106: 161–171.PubMedCrossRefGoogle Scholar
- Thomas, L., Blachly-Dyson, E., Colombini, M., and Forte, M., 1993, Mapping of residues forming the voltage sensor of the VDAC channel, Proc. Natl. Acad. Sci. USA 90: 5446–5449.PubMedCrossRefGoogle Scholar
- Troll, H., Malchow, D., Müller-Taubenberger, A., Humbel, B., Lottspeich, F., Ecke, M., Gerisch, G., Schmid, A., and Benz, R., 1992, Purification, functional characterization, and cDNA sequencing of mitochondrial porin from dictyostelium discoideum, J. Biol. Chem. 267: 21072–21079.PubMedGoogle Scholar
- Unwin, P. N. T., and Zampighi, G., 1980, Structure of the junction between communicating cells, Nature 283: 545–549.PubMedCrossRefGoogle Scholar
- Vodyanoy, I., Bezrukov, S. M., and Colombini, M., 1992, Measurement of ion channel access resistance, Biophys. J. 61: A114.Google Scholar
- Weiss, M. S., Wacker, T., Weckesser, J., Weite, W, and Schulz, G. E., 1990, The three-dimensional structure of porin from Rhodobacter capsulatus at 3 Å resolution, FEBS Lett. 267: 268–272.PubMedCrossRefGoogle Scholar
- Xie, G., and Wilson, J. E., 1990, Rat brain hexokinase: The hydrophobic N-terminus of the mitochondrially bound enzyme is inserted in the lipid bilayer, Arch. Biochem. Biophys. 276: 285–293.PubMedCrossRefGoogle Scholar
- Yellen, G. M., Jurman, M., Abramson, T., and MacKinnon, R., 1991, Mutations affecting internal TEA blockade identify the probable pore-forming region of a K+ channel, Science 251: 939–942.PubMedCrossRefGoogle Scholar
- Yilmaz, M. T., Sener, A., and Malaisse, W. J., 1987, Glycerol phosphorylation and oxidation in pancreatic islets, Mol. Cell. Endocrinol. 52: 251–256.PubMedCrossRefGoogle Scholar
- Zalman, L. S., Nikaido, H., and Kagawa, Y., 1980, Mitochondrial outer membrane contains a protein producing nonspecific diffusion channels, J. Biol. Chem. 255: 1771–1774.PubMedGoogle Scholar
- Zambrowicz, E. B., and Colombini, M., 1993, Zero-current potentials in a large membrane channel: A simple theory accounts for complex behavior, Biophys. J. 65: 1093–1100.PubMedCrossRefGoogle Scholar
- Zhang, D. W, and Colombini, M., 1989, Inhibition by aluminum hydroxide of the voltage-dependent closure of the mitochondrial channel, VDAC., Biochim. Biophys. Acta 991: 68–78.PubMedCrossRefGoogle Scholar
- Zhang, D. W, and Colombini, M., 1990, Group IIIA-metal hydroxides indirectly neutralize the voltage sensor of the voltage-dependent mitochondrial channel, VDAC., by interacting with a dynamic binding site, Biochim. Biophys. Acta 1025: 127–134.PubMedCrossRefGoogle Scholar
- Zimmerberg, J., and Parsegian, V. A., 1986, Polymer inaccessible volume changes during opening and closing of a voltage-dependent ionic channel, Nature 323: 36–39.PubMedCrossRefGoogle Scholar
- Zizi, M., Forte, M., Blachly-Dyson, E., and Colombini, M., 1994, NADH regulates the gating of VDAC., the mitochondrial outer membrane channel, J. Biol. Chem. 269: 1614–1616.PubMedGoogle Scholar
- Zizi, M., Thomas, L., Blachly-Dyson, E., Forte, M., and Colombini, M., 1995, Oriented channel insertion reveals the motion of a transmembrane beta strand during voltage gating of VDAC., J. Membr. Biol. 144: 121–129.PubMedGoogle Scholar