Subcellular Proteomics pp 3-11 | Cite as
Keynotes on Membrane Proteomics
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Keywords
Membrane Protein Sodium Dodecyl Sulfate Lipid Bilayer Intrinsic Membrane Protein Ionic Detergent
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- Bell, A.W., Ward, M.A., Blackstock, W.P., Freeman, H.N., Choudhary, J.S., Lewis, A.P., Chotai, D., Fazel, A., Gushue, J.N., Paiement, J., Palcy, S., Chevet, E., Lafreniere-Roula, M., Solari, R., Thomas, D.Y., Rowley, A. and Bergeron, J.J. (2001) Proteomics characterization of abundant Golgi membrane proteins. J. Biol. Chem. 276, 5152–5165.PubMedCrossRefGoogle Scholar
- Blonder, J., Conrads, T.P., Yu, L.R., Terumuma, A., Janini, G.M., Issaq, H.J., Vogel, J. and Veenstra, T.D. (2004) A detergent- and cyanogen bromide-free method for integral membrane proteomics: application to Halobacterium purple membranes and human epidermis. Proteomics 4, 31–45.PubMedCrossRefGoogle Scholar
- Camacho-Carvajal, M.M., Wollscheid, B., Aebersold, R., Steimle, V. and Schamel, W.W. (2004) Two-dimensional Blue native/SDS gel electrophoresis of multi-protein complexes from whole cellular lysates: a proteomics approach. Mol. Cell. Proteomics 3, 176–182.PubMedCrossRefGoogle Scholar
- Chevallet, M., Santoni, V., Poinas, A., Rouquié, D., Fuchs, A., Kieffer, S., Rossignol, M., Lunardi, J., Garin, J. and Rabilloud, T. (1998) New zwitterionic detergents improve the analysis of membrane proteins by two-dimensional electrophoresis. Electrophoresis 19, 1901–1909.PubMedCrossRefGoogle Scholar
- Cross, G.A. (1990) Glycolipid anchoring of plasma membrane proteins. Ann. Rev. Cell. Biol. 6, 1–39.PubMedCrossRefGoogle Scholar
- Devreese, B., Vanrobaeys, F., Smet, J., Van Beeumen, J. and Van Coster, R. (2002) Mass spectrometric identification of mitochondrial oxidative phosphorylation subunits separated by two-dimensional blue-native polyacrylamide gel electrophoresis. Electrophoresis 23, 2525–2533.PubMedCrossRefGoogle Scholar
- Fischer, F., Wolters, D., Rogner, M. and Poetsch, A. (2006) Toward the complete membrane proteome: high coverage of integral membrane proteins through transmembrane peptide detection. Mol. Cell. Proteomics 5, 444–453.PubMedCrossRefGoogle Scholar
- Gevaert, K., Goethals, M., Martens, L., Van Damme, J., Staes, A., Thomas, G.R. and Vandekerckhove, J. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 21, 566–569.PubMedCrossRefGoogle Scholar
- Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H. and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994–999.PubMedCrossRefGoogle Scholar
- Hartinger, J., Stenius, K., Hogemann, D. and Jahn, R. (1996) 16-BAC/SDS-PAGE: a two-dimensional gel electrophoresis system suitable for the separation of integral membrane proteins. Anal. Biochem. 124, 126–133.CrossRefGoogle Scholar
- Iwata, S., Lee, J.W., Okada, K., Lee, J.K., Iwata, M., Rasmussen, B., Link, T.A., Ramaswamy, S. and Jap, B.K. (1998) Complete structure of the 11-subunit bovine mitochondrial cytochrome bcl complex. Science 281, 64–71.PubMedCrossRefGoogle Scholar
- Luche, S., Santoni, V. and Rabilloud, T. (2003) Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis. Proteomics 3, 249–253.PubMedCrossRefGoogle Scholar
- Macfarlane, D.E. (1989) Two dimensional benzyldimethyl-n-hexadecylammonium chloride-sodium dodecyl sulfate preparative polyacrylamide gel electrophoresis: a high capacity high resolution technique for the purification of proteins from complex mixtures. Anal. Biochem. 176, 457–463.PubMedCrossRefGoogle Scholar
- Molloy, M.P., Herbert, B.R., Williams, K.L. and Gooley, A.A. (1999) Extraction of Escherichia coli proteins with organic solvents prior to two-dimensional electrophoresis. Electrophoresis 20, 701–704.PubMedCrossRefGoogle Scholar
- Moritz, R.L., Clippingdale, A.B., Kapp, E.A., Eddes, J.S., Ji, H., Gilbert, S., Connolly, L.M. and Simpson, R.J. (2005) Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins. Proteomics 5, 3402–3413.PubMedCrossRefGoogle Scholar
- Nijtmans, L.G., Henderson, N.S. and Holt, I.J. (2002) Blue Native electrophoresis to study mitochondrial and other protein complexes. Methods 26, 327–334.PubMedCrossRefGoogle Scholar
- Novakova, Z., Man, P., Novak, P., Hozak, P. and Hodny, Z. (2006) Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis. Electrophoresis 27, 1277–1287.PubMedCrossRefGoogle Scholar
- Rabilloud, T., Adessi, C., Giraudel, A. and Lunardi, J. (1997) Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 18, 307–316.PubMedCrossRefGoogle Scholar
- Santoni, V., Molloy, M.P. and Rabilloud, T. (2000) Membrane proteins and proteomics: un amour imposssible? Electrophoresis 21, 1054–1070.PubMedCrossRefGoogle Scholar
- Schagger, H. and von Jagow, G. (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 199, 223–231.PubMedCrossRefGoogle Scholar
- Szponarski, W., Sommerer, N., Boyer, J.C., Rossignol, M. and Gibrat, R. (2004) Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics 4, 397–406.PubMedCrossRefGoogle Scholar
- Verma, D.P.S., Cheon, C.I. and Hong, Z. (1994) Small GTP-binding proteins and membrane biogenesis in plants. Plant Physiol. 106, 1–6.PubMedGoogle Scholar
- Washburn, M.P., Wolters, D. and Yates, J.R. 3rd. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242–247.PubMedCrossRefGoogle Scholar
- Wilson, D., Hall, M.E., Stone, G.C. and Rubin, R.W. (1977) Some improvements in two-dimensional gel electrophoresis of proteins. Protein mapping of eukaryotic tissue extracts. Anal. Biochem. 83, 33–44.PubMedCrossRefGoogle Scholar
- Wu, C.C., MacCoss, M.J., Howell, K.E. and Yates, J.R. 3rd. (2003) A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 21, 532–538.PubMedCrossRefGoogle Scholar
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