Quantitative Analysis of mtDNA Content in Formalin-Fixed Paraffin-Embedded Muscle Tissue

  • Aida Font
  • Frederic Tort
  • Aleix Navarro-Sastre
  • Victòria Cusí
  • Judit García-Villoria
  • Paz Briones
  • Antonia Ribes
Chapter
Part of the JIMD Reports book series (JIMD, volume 1)

Abstract

Quantification of mitochondrial DNA (mtDNA) content is an essential tool for the diagnosis of mtDNA depletion syndrome (MDS). Samples collected and processed for anatomopathology studies represent a unique source of archived biological material. Thus, the possibility to study mtDNA copy number in these specimens would be a useful way to screen for MDS. In this study, we designed and validated the methodology to determine mtDNA content by quantitative real-time polymerase chain reaction (qRT-PCR) in formalin-fixed paraffin-embedded (FFPE) muscle tissue. We studied 14 frozen muscle biopsies and compared the results with a portion of the same biopsy embedded in paraffin. Our results showed a similar variability among frozen and FFPE muscle biopsies. Patients with MDS detected in frozen muscle were also confirmed in their corresponding FFPE samples, which validate the usefulness of this approach. We conclude that the analysis of mtDNA copy number in FFPE muscle tissue by qRT-PCR is a useful method for the molecular screening of patients suspected to have MDS when frozen biopsies are not available. Analysis of these samples would facilitate retrospective studies and diagnostic procedures.

Notes

Acknowledgements

This research was supported in part by the Spanish Ministerio de Sanidad Grant PI08/90348. CIBERER, is an initiative of Instituto de Salud Carlos III.

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Copyright information

© SSIEM and Springer-Verlag Berlin Heidelberg 2011

Authors and Affiliations

  • Aida Font
    • 1
  • Frederic Tort
    • 1
    • 2
  • Aleix Navarro-Sastre
    • 1
    • 2
  • Victòria Cusí
    • 3
  • Judit García-Villoria
    • 1
    • 2
  • Paz Briones
    • 1
    • 2
    • 4
  • Antonia Ribes
    • 1
    • 2
    • 5
  1. 1.Sección de Errores Congénitos del Metabolismo, Servicio de Bioquímica y Genética MolecularHospital ClínicBarcelonaSpain
  2. 2.CIBER de Enfermedades Raras (CIBERER)BarcelonaSpain
  3. 3.Servicio de Anatomía PatológicaHospital San Joan de DéuBarcelonaSpain
  4. 4.Consejo Superior de Investigaciones Científicas (CSIC)BarcelonaSpain
  5. 5.BarcelonaSpain

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