Straight-Line Drawings of Protein Interactions

System demonstration
  • Wojciech Basalaj
  • Karen Eilbeck
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 1731)

Abstract

This paper presents the first attempt at automatically generating drawings of protein interaction graphs. Such graphs are large and not necessarily connected. A straight-line drawing method based on the spring embedder metaphor has been found highly suitable for this task. The drawings produced exhibit edge length uniformity, even vertex distribution, and preserve graph topology well. This method is capable of generating both two- and three-dimensional layouts. A preliminary evaluation has been carried out based on a representative collection of interaction graphs.

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Copyright information

© Springer-Verlag Berlin Heidelberg 1999

Authors and Affiliations

  • Wojciech Basalaj
    • 1
  • Karen Eilbeck
    • 2
  1. 1.University of Cambridge Computer LaboratoryCambridgeUK
  2. 2.University of Manchester Biochemistry DivisionManchesterUK

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