Approximating the Maximum Isomorphic Agreement Subtree Is Hard

  • Paola Bonizzoni
  • Gianluca Della Vedova
  • Giancarlo Mauri
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 1848)

Abstract

The Maximum Isomorphic Agreement Subtree (MIT) problem is one of the simplest versions of the Maximum Interval Weight Agreement Subtree method (MIWT) which is used to compare phylogenies. More precisely MIT allows to provide a subset of the species such that the exact distances between species in such subset is preserved among all evolutionary trees considered. In this paper, the approximation complexity of the MIT problem is investigated, showing that it cannot be approximated in polynomial time within factor logδn for any δ > 0 unless NPDTIME(2polylog n) for instances containing three trees. Moreover, we show that such result can be strengthened whenever instances of the MIT problem can contain an arbitrary number of trees, since MIT shares the same approximation lower bound of MAX CLIQUE.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2000

Authors and Affiliations

  • Paola Bonizzoni
    • 1
  • Gianluca Della Vedova
    • 1
  • Giancarlo Mauri
    • 1
  1. 1.Dipartimento di Informatica, Sistemistica e ComunicazioneUniversità degli Studi di Milano - BicoccaMilanoItaly

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