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Modelling Coordination in Biological Systems

  • Dave Clarke
  • David Costa
  • Farhad Arbab
Part of the Lecture Notes in Computer Science book series (LNCS, volume 4313)

Abstract

We present an application of the Reo coordination paradigm to provide a compositional formal model for describing and reasoning about the behaviour of biological systems, such as regulatory gene networks. Reo governs the interaction and flow of data between components by allowing the construction of connector circuits which have a precise formal semantics. When applied to systems biology, the result is a graphical model, which is comprehensible, mathematically precise, and flexible.

Keywords

Model Check Gene Regulatory Network Boolean Network Linear Temporal Logic Probabilistic Boolean Network 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2006

Authors and Affiliations

  • Dave Clarke
    • 1
  • David Costa
    • 1
  • Farhad Arbab
    • 1
  1. 1.CWIAmsterdamThe Netherlands

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