Proteomics Today, Proteomics Tomorrow

Aebersold, R., and Mann, M., 2003, Mass spectrometry-based proteomics. Nature 422: 198–207.PubMedGoogle Scholar

Anderson, N. L., and Anderson, N. G., 2002, The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics 1: 845–67.PubMedGoogle Scholar

Blackstock, W. P., and Weir, M. P., 1999, Proteomics: quantitative and physical mapping of cellular proteins. Trends Biotechnol. 17: 121–7.CrossRefPubMedGoogle Scholar

Bradshaw, R. A., and Dennis, E. A., 2003, Handbook of Cell Signaling, Elsevier Academic Press, San Diego. Vol. 1–3.Google Scholar

Cohen, J., 2001, The Proteomics Payoff. Tech. Rev. 104: 55–63.Google Scholar

Eisenberg, D., Marcotte, E. M., Xenarios, I., and Yeates, T. O., 2000, Protein function in the post-genomic era. Nature 405: 823–6.CrossRefPubMedGoogle Scholar

Fields, S., and Song, O., 1989, A novel genetic system to detect protein-protein interactions. Nature 340: 245–246.CrossRefPubMedGoogle Scholar

Gavin, A. C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Hofert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M. A., Copley, R. R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti_Furga, G., 2002, Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141–7.CrossRefPubMedGoogle Scholar

Geyer, C. R., and Brent, R., 2000, Selection of genetic agents from random peptide aptamer expression libraries. Meth. Enzymol. 328: 171–208.PubMedCrossRefGoogle Scholar

Grayhack, E., and Phizicky, E., 2001, Genomic analysis of biochemical function. Curr. Opin. Chem. Biol. 5: 34–39.CrossRefPubMedGoogle Scholar

Hanash, S., 2003, Disease proteomics. Nature 422: 226–32.CrossRefPubMedGoogle Scholar

Hanash, S., 2003, Harnessing immunity for cancer marker discovery. Nat. Biotechnol. 21: 37–8.CrossRefPubMedGoogle Scholar

Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D., Moore, L., Adams, S. L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., Vo, M., Taggart, J., Goudreault, M., Muskat, B., Alfarano, C., Dewar, D., Lin, Z., Michalickova, K., Willems, A. R., Sassi, H., Nielsen, P. A., Rasmussen, K. J., Andersen, J. R., Johansen, L. E., Hansen, L. H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B. D., Matthiesen, J., Hendrickson, R. C., Gleeson, F., Pawson, T., Moran, M. F., Durocher, D., Mann, M., Hogue, C. W., Figeys, D., and Tyers, M., 2002, Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180–3.CrossRefPubMedGoogle Scholar

Huber, L. A., 2003, Is proteomics heading in the wrong direction? Nat. Rev. Mol. Cell. Biol. 4: 74–80.CrossRefPubMedGoogle Scholar

Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y., 2001, A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. U.S.A. 98: 4569–74.CrossRefPubMedGoogle Scholar

Klose, J., 1975, Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik 26: 231–43.PubMedGoogle Scholar

Liebler, D. C., 2002, Introduction to Proteomics, Humana Press, Totowa, NJ.Google Scholar

Nollau, P., and Mayer, B. J., 2001, Profiling the global tyrosine phosphorylation state by Src homology 2 domain binding. Proc. Natl. Acad. Sci. U. S. A. 98: 13531–36.CrossRefPubMedGoogle Scholar

O’Farrell, P. H., 1975, High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250: 4007–21.Google Scholar

Petach, H., and Gold, L., 2002, Dimensionality is the issue: use of photoaptamers in protein microarrays. Curr. Opin. Biotech. 13: 309–314.PubMedGoogle Scholar

Petricoin, E. F., Zoon, K. C., Kohn, E. C., Barrett, J. C., and Liotta, L. A., 2002, Clinical proteomics: translating benchside promise into bedside reality. Nat. Rev. Drug Discov. 1: 683–95.CrossRefPubMedGoogle Scholar

Phizicky, E., Bastiaens, P. I., Zhu, H., Snyder, M., and Fields, S., 2003, Protein analysis on a proteomic scale. Nature 422: 208–15.CrossRefPubMedGoogle Scholar

Sali, A., Glaeser, R., Earnest, T., and Baumeister, W., 2003, From words to literature in structural proteomics. Nature 422: 216–25.CrossRefPubMedGoogle Scholar

Shalon, D., Smith, S. J., and Brown, P. O., 1996, A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 6: 639–645.PubMedGoogle Scholar

Tyers, M., and Mann, M., 2003, From genomics to proteomics. Nature 422: 193–7.CrossRefPubMedGoogle Scholar

Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., and Rothberg, J. M., 2000, A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623–7.PubMedGoogle Scholar

von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S. G., Fields, S., and Bork, P., 2002, Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417: 399–403.Google Scholar

Wolters, D. A., Washburn, M. P., and Yates, J. R., III, 2001, An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73: 5683–5690.CrossRefPubMedGoogle Scholar

Yates, J. R., 1998, Mass spectrometry and the age of the proteome. J. Mass. Spect. 33: 1–19.Google Scholar

Zhu, H., Bilgin, M., Bangham, R., Hall, D., Casamayor, A., Bertone, P., Lan, N., Jansen, R., Bidlingmaier, S., Houfek, T., Mitchell, T., Miller, P., Dean, R. A., Gerstein, M., and Snyder, M., 2001, Global analysis of protein activities using proteome chips. Science 293: 2101–5.CrossRefPubMedGoogle Scholar