Failure to Maintain T Cell DNA Methylation and Chromatin Structure Contributes to Human Lupus

  • Donna Ray
  • Bruce Richardson

5. Conclusions

The studies summarized in this chapter demonstrate that the failure to maintain DNA methylation patterns in mature CD4+ T cells causes aberrant expression of several methylation-sensitive genes, including LFA-1, perforin, CD70, and likely others, and that their overexpression alters T cell function, promoting autoreactivity, monocyte/macrophage killing, and B cell overstimulation. Furthermore, T cells experimentally demethylated with DNA methyltransferase or ERK signaling pathway inhibitors cause a lupus-like disease in murine models. Procainamide and hydralazine are DNA methylation inhibitors and cause a lupus-like disease in genetically susceptible individuals. Patients with idiopathic lupus have hypomethylated DNA, overexpress the same genes due to the same changes in DNA methylation patterns as in the methylation inhibition model, and demonstrate identical changes in CD4+ T cell function including autoreactive, perforin-mediated monocyte killing and B cell overstimulation. Thus, similar changes in DNA methylation and chromatin structure likely contribute to the pathogenesis of autoimmunity in the DNA hypomethylation model as in idiopathic lupus. The DNA hypomethylation model may also provide an approach to predict additional aberrantly expressed genes in human lupus T cells, since CD11a, perforin, and CD70 were predicted by this model. Finally, these studies also suggest that environmental agents may act by mechanisms analogous to those seen in DIL, triggering changes in chromatin structure and affecting gene expression through signaling inhibition or direct DNA methyltransferase inhibition. Clearly, there is a fundamental role for a failure to maintain DNA methylation patterns and chromatin structure in this disease.

Keywords

Systemic Lupus Erythematosus Systemic Lupus Erythematosus Disease Activity Index Immune Complex Glomerulonephritis Idiopathic Lupus 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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References

  1. Adams, R.L.P. and Burdon, R.H. (1985). DNA methylation in the cell. In A. Rich (ed.), Molecular Biology of DNA Methylation. Springer-Verlag, New York. pp. 9–18.Google Scholar
  2. Amir, R.E., Van den Veyver, I.B., Wan, M., Tran, C.Q., Francke, U., and Zoghbi, H.Y. (1999). Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat. Genet., 23, 185–188.PubMedGoogle Scholar
  3. Antequera, F. and Bird, A. (1993). Number of CpG islands and genes in human and mouse. Proc. Natl. Acad. Sci. U S A, 90, 11995–11999.PubMedGoogle Scholar
  4. Attwood, J.T., Yung, R.L., and Richardson, B.C. (2002). DNA methylation and the regulation of gene transcription. Cell. Mol. Life Sci., 59, 241–257.PubMedGoogle Scholar
  5. Baylin, S.B. and Herman, J.G. (2000). DNA hypermethylation in tumorigenesis: Epigenetics joins genetics. Trends Genet., 16, 168–174.CrossRefPubMedGoogle Scholar
  6. Bestor, T.H. (1998). The host defence function of genomic methylation patterns. Novartis Foundation Symposium, 214, 187–195; discussion 195–199, 228–232.PubMedGoogle Scholar
  7. Chuang, L.S., Ian, H.I., Koh, T.W., Ng, H.H., Xu, G., and Li, B.F. (1997). Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1. Science, 277, 1996–2000.CrossRefPubMedGoogle Scholar
  8. Clark, S.J., Harrison, J., and Molloy, P.L. (1997). Sp1 binding is inhibited by (m)Cp(m)CpG methylation. Gene, 195, 67–171.CrossRefPubMedGoogle Scholar
  9. Comb, M. and Goodman, H.M. (1990). CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2. Nucleic Acids Res., 18, 3975–3982.PubMedGoogle Scholar
  10. Cornacchia, E., Golbus, J., Maybaum, J., Strahler, J., Hanash, S., and Richardson, B. (1988). Hydralazine and procainamide inhibit T cell DNA methylation and induce autoreactivity. J. Immunol., 140, 2197–2200.PubMedGoogle Scholar
  11. Deng, C., Kaplan, M.J., Yang, J., Ray, D., Zhang, Z., McCune, W.J., Hanash, S.M., and Richardson, B.C. (2001). Decreased Ras-mitogen-activated protein kinase signaling may cause DNA hypomethylation in T lymphocytes from lupus patients. Arthritis Rheum., 44, 397–407.CrossRefPubMedGoogle Scholar
  12. Deng, C., Lu, Q., Zhang, Z., Rao, T., Attwood, J., Yung, R., and Richardson, B. (2003). Hydralazine may induce autoimmunity by inhibiting extracellular signal-regulated kinase pathway signaling. Arthritis Rheum., 48, 746–756.CrossRefPubMedGoogle Scholar
  13. Deng, C., Yang, J., Scott, J., Hanash, S., and Richardson, B.C. (1998). Role of the Ras-MAPK signaling pathway in the DNA methyltransferase response to DNA hypomethylation. Biol. Chem., 379, 1113–1120.PubMedGoogle Scholar
  14. Ehrlich, M. and Wang, R.Y. (1981). 5-Methylcytosine in eukaryotic DNA. Science, 212, 1350–1357.PubMedGoogle Scholar
  15. Gladman, D. (2004). Epidemiology of systemic lupus erythematosus. In R.G. Lahita (ed.), Systemic Lupus Erythematosus. Elsevier Academic, New York. pp. 697–715.Google Scholar
  16. Glover, A.B. and Leyland-Jones, B. (1987). Biochemistry of azacitidine: A review. Cancer Treatm. Rep., 71, 959–964.Google Scholar
  17. Goldstein, R. and Arnett, F.C. (1987). The genetics of rheumatic disease in man. Rheum. Dis. Clin. N Am., 13, 487–510.Google Scholar
  18. Hansen, R.S., Wijmenga, C., Luo, P., Stanek, A.M., Canfield, T.K., Weemaes, C.M., and Gartler, S.M. (1999). The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome. Proc. Natl. Acad. Sci. U S A, 96, 14412–14417.PubMedGoogle Scholar
  19. Hess, E.V. (1995). Environmental lupus syndromes. Br. J. Rheum., 34, 597–599.Google Scholar
  20. Holliday, R. and Pugh, J.E. (1975). DNA modification mechanisms and gene activity during development. Science, 187, 226–232.PubMedGoogle Scholar
  21. Kammer, G.M., Perl, A., Richardson, B.C., and Tsokos, G.C. (2002). Abnormal T cell signal transduction in systemic lupus erythematosus. Arthritis Rheum., 46, 1139–1154.CrossRefPubMedGoogle Scholar
  22. Kaplan, M.J., Beretta, L., Yung, R.L., and Richardson, B.C. (2000). LFA-1 overexpression and T cell autoreactivity: Mechanisms. Immunol. Invest., 29, 427–442.PubMedGoogle Scholar
  23. Kaplan, M.J., Lu, Q., Wu, A., Attwood, J., and Richardson, B. (2004). Demethylation of promoter regulatory elements contributes to perforin overexpression in CD4+ lupus T cells. J. Immunol., 172, 3652–3661.PubMedGoogle Scholar
  24. Kobata, T., Jacquot, S., Kozlowski, S., Agematsu, K., Schlossman, S.F., and Morimoto, C. (1995). CD27-CD70 interactions regulate B-cell activation by T cells. Proc. Natl. Acad. Sci. U S A, 92, 11249–11253.PubMedGoogle Scholar
  25. Kyttaris, V. and Tsokos, G. (2003). Uncovering the genetics of systemic lupus erythematosus: Implications for therapy. Am. J. Pharmacogenomics, 3, 193–202.CrossRefPubMedGoogle Scholar
  26. Lens, S.M., Tesselaar, K., van Oers, M.H., and van Lier, R.A. (1998). Control of lymphocyte function through CD27-CD70 interactions. Semin. Immunol., 10, 491–499.CrossRefPubMedGoogle Scholar
  27. Li, E., Bestor, T.H., and Jaenisch, R. (1992). Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell, 69, 915–926.PubMedGoogle Scholar
  28. Liossis, S. and Tsokos, G. (1999). B cells in systemic lupus erythematosus. In G. Kammer and G. Tsokos (eds), Lupus. Molecular and Cellular Pathogenesis. Humana Press Inc, Totowa, New Jersey. pp. 167–180.Google Scholar
  29. Lu, Q., Kaplan, M., Ray, D., Ray, D., Zacharek, S., Gutsch, D., and Richardson, B. (2002). Demethylation of ITGAL (CD11a) regulatory sequences in systemic lupus erythematosus. Arthritis Rheum., 46, 1282–1291.CrossRefPubMedGoogle Scholar
  30. Lu, Q., Wu, A., Ray, D., Deng, C., Attwood, J., Hanash, S., Pipkin, M., Lichtenheld, M., and Richardson, B. (2003). DNA methylation and chromatin structure regulate T cell perforin gene expression. J. Immunol., 170, 5124–5132.PubMedGoogle Scholar
  31. Mevorach, D., Zhou, J.L., Song, X., and Elkon, K.B. (1998). Systemic exposure to irradiated apoptotic cells induces autoantibody production. J. Exp. Med., 188, 387–392.PubMedGoogle Scholar
  32. Mongey, A.-B. and Hess, E.V. (2002). The role of environment in systemic lupus erythematosus and associated disorders. In D.J. Wallace and B.H. Hahn (eds), Dubois’s Lupus Erythematosus. Lippincott Williams and Wilkins, Philadelphia. pp. 33–64.Google Scholar
  33. Oelke, K., Lu, Q., Richardson, D., Wu, A., Deng, C., Hanash, S., and Richardson, B. (2004). Overexpression of CD70 and overstimulation of IgG synthesis by lupus T cells and T cells treated with DNA methylation inhibitors. Arthritis Rheum., 50, 1850–1860.CrossRefPubMedGoogle Scholar
  34. Okano, M., Bell, D.W., Haber, D.A., and Li, E. (1999). DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell, 99, 247–257.CrossRefPubMedGoogle Scholar
  35. Okano, M., Xie, S., and Li, E. (1998a). Dnmt2 is not required for de novo and maintenance methylation of viral DNA in embryonic stem cells. Nucleic Acids Res., 26, 2536–2540.CrossRefPubMedGoogle Scholar
  36. Okano, M., Xie, S., and Li, E. (1998b). Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat. Genet., 19, 219–220.PubMedGoogle Scholar
  37. Quddus, J., Johnson, K.J., Gavalchin, J., Amento, E.P., Chrisp, C.E., Yung, R.L., and Richardson, B.C. (1993). Treating activated CD4+ T cells with either of two distinct DNA methyltransferase inhibitors, 5-azacytidine or procainamide, is sufficient to cause a lupus-like disease in syngeneic mice. J. Clin. Invest., 92, 38–53.PubMedGoogle Scholar
  38. Richardson, B. (1986). Effect of an inhibitor of DNA methylation on T cells. II. 5-Azacytidine induces self-reactivity in antigen-specific T4+ cells. Hum. Immunol., 17, 456–470.CrossRefPubMedGoogle Scholar
  39. Richardson, B., Kahn, L., Lovett, E.J., and Hudson, J. (1986). Effect of an inhibitor of DNA methylation on T cells. I. 5-Azacytidine induces T4 expression on T8+ T cells. J. Immunol., 137, 35–39.PubMedGoogle Scholar
  40. Richardson, B., Powers, D., Hooper, F., Yung, R.L., and O’Rourke, K. (1994). Lymphocyte function-associated antigen 1 overexpression and T cell autoreactivity. Arthritis Rheum., 37, 1363–1372.PubMedGoogle Scholar
  41. Richardson, B., Scheinbart, L., Strahler, J., Gross, L., Hanash, S., and Johnson, M. (1990). Evidence for impaired T cell DNA methylation in systemic lupus erythematosus and rheumatoid arthritis. Arthritis Rheum., 33, 1665–1673.PubMedGoogle Scholar
  42. Richardson, B.C., Buckmaster, T., Keren, D.F., and Johnson, K.J. (1993). Evidence that macrophages are programmed to die after activating autologous, cloned, antigen-specific, CD4+ T cells. E. J. Immunol., 23, 1450–1455.Google Scholar
  43. Richardson, B.C., Liebling, M.R., and Hudson, J.L. (1990). CD4+ cells treated with DNA methylation inhibitors induce autologous B cell differentiation. Clin. Immunol. Immunopathol., 55, 368–381.CrossRefPubMedGoogle Scholar
  44. Richardson, B.C., Strahler, J.R., Pivirotto, T.S., Quddus, J., Bayliss, G.E., Gross, L.A., O’Rourke, K.S., Powers, D., Hanash, S.M., and Johnson, M.A. (1992). Phenotypic and functional similarities between 5-azacytidine-treated T cells and a T cell subset in patients with active systemic lupus erythematosus. Arthritis Rheum., 35, 647–662.PubMedGoogle Scholar
  45. Riggs, A.D. (1985). X-inactivation, DNA methylation, and differentiation revered. In A. Razin, H. Cedar, and A.D. Riggs (eds), DNA Methylation: Biochemistry and Biological Significance. Springer-Verlag, New York. pp. 269–278.Google Scholar
  46. Scheinbart, L.S., Johnson, M.A., Gross, L.A., Edelstein, S.R., and Richardson, B.C. (1991). Procainamide inhibits DNA methyltransferase in a human T cell line. J. Rheumatol., 18, 530–534.PubMedGoogle Scholar
  47. Stoger, R., Kubicka, P., Liu, C.G., Kafri, T., Razin, A., Cedar, H., and Barlow, D.P. (1993). Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal. Cell, 73, 61–71.CrossRefPubMedGoogle Scholar
  48. Tsao, B.P. and Grossman, J.M. (2001). Genetics and systemic lupus erythematosus. Curr. Rheumatol. Rep., 3, 183–190.PubMedGoogle Scholar
  49. Walport, M.J. (2000). Lupus, DNase and defective disposal of cellular debris. Nat. Genet., 25, 135–136.CrossRefPubMedGoogle Scholar
  50. Yoder, J.A., Soman, N.S., Verdine, G.L., and Bestor, T.H. (1997). DNA (cytosine-5)-methyltrans-ferases in mouse cells and tissues. Studies with a mechanism-based probe. J. Mol. Biol., 270, 385–395.CrossRefPubMedGoogle Scholar
  51. Yu, F., Thiesen, J., and Stratling, W.H. (2000). Histone deacetylase-independent transcriptional repression by methyl-CpG-binding protein 2. Nucleic Acids Res., 28, 2201–2206.PubMedGoogle Scholar
  52. Yung, R., Chang, S., Hemati, N., Johnson, K., and Richardson, B. (1997). Mechanisms of drug-induced lupus. IV. Comparison of procainamide and hydralazine with analogs in vitro and in vivo. Arthritis Rheum., 40, 1436–1443.PubMedGoogle Scholar
  53. Yung, R., Kaplan, M., Ray, D., Schneider, K., Mo, R.R., Johnson, K., and Richardson, B. (2001). Autoreactive murine Th1 and Th2 cells kill syngeneic macrophages and induce autoantibodies. Lupus, 10, 539–546.CrossRefPubMedGoogle Scholar
  54. Yung, R., Powers, D., Johnson, K., Amento, E., Carr, D., Laing, T., Yang, J., Chang, S., Hemati, N., and Richardson, B. (1996). Mechanisms of drug-induced lupus. II. T cells overexpressing lymphocyte function-associated antigen 1 become autoreactive and cause a lupuslike disease in syngeneic mice. J. Clin. Invest., 97, 2866–2871.PubMedGoogle Scholar
  55. Yung, R.L., Quddus, J., Chrisp, C.E., Johnson, K.J., and Richardson, B.C. (1995). Mechanism of druginduced lupus. I. Cloned Th2 cells modified with DNA methylation inhibitors in vitro cause autoimmunity in vivo. J. Immunol., 154, 3025–3035.PubMedGoogle Scholar
  56. Yung, R.L. and Richardson, B.C. (1994). Drug-induced lupus. Rheum. Dis. Clin. N. Am., 20, 61–86.Google Scholar
  57. Yung, R.L. and Richardson, B.C. (2003). Drug-induced lupus. In M. Hochberg, A. Silman, J. Smolen, M. Weinblatt, and M. Weisman (eds) Rheumatology. Harcourt Health Sciences, London.Google Scholar

Copyright information

© Springer Science+Business Media, Inc. 2005

Authors and Affiliations

  • Donna Ray
    • 1
  • Bruce Richardson
    • 1
  1. 1.Department of MedicineUniversity of Michigan

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