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Nonparametric Frequency Detection and Optimal Coding in Molecular Biology

  • David S. Stoffer
Part of the International Series in Operations Research & Management Science book series (ISOR, volume 46)

Abstract

The concept of spectral envelope for analyzing periodicities in categorical-valued time series was introduced in the statistics literature as a computationally simple and general statistical methodology for the harmonic analysis and scaling of non-numeric sequences. One benefit of this technique is that it combines nonparametric statistical analysis with modern computer power to quickly search for diagnostic patterns within long sequences. An interesting area of application is the nucleosome positioning signals and optimal alphabets in long DNA sequences. The examples focus on period lengths in nucleosome signals and optimal alphabets in herpesviruses and we point out some inconsistencies in established gene segments.

Keywords

Spectral Analysis Optimal Scaling Nucleosome Positioning Signals Herpesviruses DNA Sequences 

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Copyright information

© Springer Science + Business Media, Inc. 2002

Authors and Affiliations

  • David S. Stoffer
    • 1
  1. 1.Department of StatisticsUniversity of PittsburghPittsburgh

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