Abstract
Oxo- and hydroxy-carboxylic acids are of special interest in organic synthesis. However, their introduction by chemical reactions tends to be troublesome especially with regard to stereoselectivity. We describe herein the biotechnological preparation of selected oxo- and hydroxycarboxylic acids under “green” conditions and their use as promising new building blocks. Thereby, our biotechnological goal was the development of process fundamentals regarding the variable use of renewable raw materials, the development of a multi purpose bioreactor and application of a pilot plant with standard equipment for organic acid production to minimize the technological effort. Furthermore the development of new product isolation procedures, with the aim of direct product recovery, capture of products or single step operation, was necessary. The application of robust and approved microorganisms, also genetically modified, capable of using a wide range of substrates as well as producing a large spectrum of products, was of special importance. Microbiologically produced acids, like 2-oxo-glutaric acid and 2-oxo-d-gluconic acid, are useful educts for the chemical synthesis of hydrophilic triazines, spiro-connected heterocycles, benzotriazines, and pyranoic amino acids. The chiral intermediate of the tricarboxylic acid cycle, (2R,3S)-isocitric acid, is another promising compound. For the first time our process provides large quantities of enantiopure trimethyl (2R,3S)-isocitrate which was used in subsequent chemical transformations to provide new chiral entities for further usage in total synthesis and pharmaceutical research.
Oxo- and hydroxy-carboxylic acids are of special interest in organic synthesis. However, their introduction by chemical reactions tends to be troublesome especially with regard to stereoselectivity. We describe herein the biotechnological preparation of selected oxo- and hydroxycarboxylic acids under “green” conditions and their use as promising new building blocks. Thereby, our biotechnological goal was the development of process fundamentals regarding the variable use of renewable raw materials, the development of a multi purpose bioreactor and application of a pilot plant with standard equipment for organic acid production to minimize the technological effort. Furthermore the development of new product isolation procedures, with the aim of direct product recovery, capture of products or single step operation, was necessary. The application of robust and approved microorganisms, also genetically modified, capable of using a wide range of substrates as well as producing a large spectrum of products, was of special importance. Microbiologically produced acids, like 2-oxo-glutaric acid and 2-oxo-d-gluconic acid, are useful educts for the chemical synthesis of hydrophilic triazines, spiro-connected heterocycles, benzotriazines, and pyranoic amino acids. The chiral intermediate of the tricarboxylic acid cycle, (2R,3S)-isocitric acid, is another promising compound. For the first time our process provides large quantities of enantiopure trimethyl (2R,3S)-isocitrate which was used in subsequent chemical transformations to provide new chiral entities for further usage in total synthesis and pharmaceutical research.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Abbreviations
- CA:
-
Citric acid
- EDBM:
-
Electrodialysis by bipolar membranes
- ICA:
-
(2R,3S)-Isocitric acid
- 2-OGA:
-
2-Oxoglutaric acid
- 2-OGcA:
-
2-Oxo-d-gluconic acid
- SF:
-
Shaking flask
- STR:
-
Stirred tank reactor
- TCA cycle:
-
Tricarboxylic acid cycle
References
Akiyama S, Suzuki T, Sumino Y, Nakao Y, Fukuda H (1973) Induction and citric acid productivity of fluoroacetate-sensitive mutant strains of Candida lipolytica. Agr Biol Chem 37:879–888
Ammon K (1996) Bioprozessentwicklung am Beispiel der enzymatischen Vorstufensynthese von Vitamin C. PhD Thesis, Universität Dortmund, Dortmund
Andersch J (1998) On the synthesis of N-heterocycles starting from biotechnologically obtained 2-Oxo-d-gluconic acid. PhD Thesis, Universität Leipzig, Leipzig
Andersch J, Sicker D (1999) Reductive cyclization of carbohydrate 2-nitrophenyl-hydrazones to chiral functionalized 1,2,4-benzotriazines and benzimidazoles. J Heterocycl Chem 36:589–594
Andersch J, Sicker D, Wilde H (1999a) Methyl d-arabino-hex-2-ulopyranosonate as a building block for spiro[1,4-benzoxazine-2,2’-pyrans]. Carbohydr Res 316:85–94
Andersch J, Sicker D, Wilde H (1999b) Synthesis of spiro[pyrido[3,2-b][1,4]oxazin-2,2’-pyrans] based upon methyl d-arabino-2-hexulopyranosonate. Tetrahedron Lett 40:57–58
Andersch J, Sicker D, Wilde H (1999c) Synthesis of spiro[1,4-benzothiazin-2,2’-pyrans] starting from methyl d-arabino-2-hexulosonate. J Heterocycl Chem 36:457–460
Andersch J, Sicker D, Wilde H (1999d) Synthesis of spiro[pyrido[3,2-b][1,4]oxazin-2,2’-pyrans] based upon methyl d-arabino-2-hexulosonate. J Heterocycl Chem 40:57–58
Andersch J, Hennig L, Wilde H (2000) N-Glycosidation of d-arabino-hex-2-ulosonic acid. Carbohydr Res 329:693–697
Blitzke T, Hartenstein H, Sicker D, Wilde H (1993) Synthesen auf der Basis von 2-Oxoglutarsäure. III. Synthese und Reaktionen von (E)-2-Oxoglutaconsäuredimethylester. J Prakt Chem 335(8):683–686
Blitzke T, Greif D, Kempe R, Pink M, Pulst M, Sicker D, Wilde H. (1994) Synthesen auf der Basis von 2-Oxoglutarsäure. IV. Regioselektive Synthese substituierter2-(2-Methoxycarbonyl-2H-thiopyran-3-yl)glyoxylsäuremethylester. J Prakt Chem 336: 163–165
Blitzke T, Sicker D, Wilde H (1997) Organic syntheses based on 2-oxoglutaric acid. V. Syntheses of novel 2H-1,4-benzothiazines and a 2,5-dihydro-1,5-benzothiazepine. J Heterocycl Chem 34(2):453–455
Chernyavskaya OG, Shishkanova NV, Il’chenko AP, Finogenova TV (2000) Synthesis of α-ketoglutaric acid by Yarrowia lipolyticayeast grown on ethanol. Appl Microbiol Biotechnol 53(2):152–158
Crawford TC, Andrews GC, Faubl H, Chmurny GN (1980) The structure of biologically important carbohydrates. A carbon-13 nuclear magnetic resonance study of tautomeric equilibriums in several hexulosonic acids and related compounds. J Am Chem Soc 102(7):2220–2225
Elfari M, Ha SW, Bremus C, Merfort M, Khodaverdi V, Herrmann U, Sahm H, Görisch H (2005) A Gluconobacter oxydansmutant converting glucose almost quantitatively to 5-keto-d-gluconic acid. Appl Microbiol Biotechnol 66:668–674
Ermakova IT, Shishkanova NV, Melnikova OF, Finogenova TV (1986) Properties of Candida lipolyticamutants with the modified glyoxylate cycle and their ability to produce citric and isocitric acid. I. Physiological, biochemical and cytological characteristics of mutants grown on glucose or hexadecane. Appl Microbiol Biotechnol 23(5):372–377
Finogenova TV, Shishkanova NV, Ermakova IT, Kataeva IA (1986) Properties of Candida lipolyticamutants with the modified glyoxylate cycle and their ability to produce citric and isocitric acid. II. Synthesis of citric and isocitric acid by Candida lipolytica mutants and peculiarities of their enzyme systems. Appl Microbiol Biotechnol 23:378–383
Finogenova TV, Shishkanova NV, Illarionowa WI, Losinov AB, Karklin RY, Peltzmane IZ, Jeschov VA (1989) Strain Candida lipolyticaHMM-149 as producer of isocitric acid. USSR Inventor’s Certificate SU915466, dated 23.06.1989
Finogenova TV, Shishkanova NV, Fausek EA, Eremina SS (1991) Biosynthesis of isocitric acid from ethanol by yeasts. Appl Microbiol Biotechnol 36:231–235
Finogenova TV, Kamzolova SV, Dedyukhina EG, Shishkanova NV, Il’chenko AP, Morgunov IG, Chernyavskaya OG, Sokolov AP (2002) Biosynthesis of citric and isocitric acids from ethanol by mutant Yarrowia lipolyticaN 1 under continuous cultivation. Appl Microbiol Biotechnol 59(4–5):493–500
Förster A, Jacobs K, Juretzek T, Mauersberger S, Barth G (2007) Overexpression of the ICL1 gene changes the product ratio of citric acid production by Yarrowia lipolytica. Appl Microbiol Biotechnol 77:861–869
Gupta A, Felder M, Verma V, Cullum J, Qazi GN (1999) A mutant of Gluconobacter oxydansdeficient in gluconic acid dehydrogenase. FEMS Microbiol Lett 179:501–506
Hartenstein H, Blitzke D, Sicker D, Wilde H (1993) Synthesen auf der Basis von 2-Oxoglutarsäure. II. Zur Synthese von Heterocyclen durch Reaktionen von 3-Brom-2-oxoglutarsäuredimethylester mit Binucleophilen. J Prakt Chem 335(2):176–180
Heretsch P, Thomas F, Aurich A, Krautscheid H, Sicker D, Giannis A (2008) Syntheses with a chiral building block from the citric acid cycle: (2R,3S)-isocitric acid by fermentation of sunflower oil. Angew Chem Int Ed 47:1958–1960
Hölscher T, Schleyer U, Merfort M, Bringer-Meyer S, Görisch H, Sahm H (2009) Glucose oxidation and PQQ-dependent dehydrogenases in Gluconobacter oxydans. J Mol Microbiol Biotechnol 176:6–13
Holz M (2011) Gentechnische Optimierung der Hefe Yarrowia lipolyticazur biotechnologischen Produktion von Succinat. PhD Thesis, Dresden University of Technology, Dresden
Holz M, Otto C, Kretzschmar A, Yovkova V, Aurich A, Pötter M, Marx A, Barth G (2009) Overexpression of alpha-ketoglutarate dehydrogenase in Yarrowia lipolyticaand its effect on production of organic acids. Appl Microbiol Biotechnol 89:1519–1526
Huang HJ, Liu LM, Li Y, Du GC, Chen J (2006) Redirecting carbon flux in Torulopsis glabratafrom pyruvate to alpha-ketoglutaric acid by changing metabolic co-factors. Biotechnol Lett 28:95–98
Huang C, Xu T, Zhang Y, Xue Y, Chen G (2007) Application of electrodialysis to the production of organic acids: state-of-the-art and recent developments. J Memb Sci 288(1–2):1–12
Il’chenko AP, Chernyavskaya OG, Shishkanova NV, Finogenova TV (2003) Biochemical characterization of the yeast Yarrowia lipolyticaoverproducing carboxylic acids from ethanol: nitrogen metabolism enzymes. Microbiol 72(4):418–422
Internetchemistry (2008) Kilogram quantities at last! http://www.internetchemie.info/news/2008/feb08/isoctric-acid.html. Accessed 20 Feb 2012
Kamzolova SV, Finogenova TV, Lunina YN, Perevoznikova OA, Minachova LN, Morgunov IG (2007) Characteristics of the growth on rapeseed oil and synthesis of citric and isocitric acids by Yarrowia lipolyticayeasts. Microbiol 76:20–24
Kamzolova SV, Finogenova TV, Morgunov IG (2008) Microbiological production of citric and isocitric acids from sunflower oil. Food Technol Biotechnol 46:51–59
Katsuki T, Sharpless KB (1980) The first practical method for asymmetric epoxidation. J Am Chem Soc 102(18):5974–5976
Khodja M, Schwesinger H, Sicker D, Wilde H (1994) Synthesis of 3,4-dihydro-pyridazino[1,6-a]benzimidazoles by reductive cyclization of dialkyl 2-(2-nitrophenyl-hydrazono) glutarates. Heterocycles 37:401–411
Kirrbach S, Schnelle R-R, Stottmeister U, Hauptmann S, Mann G, Wilde H, Sicker D (1992) Optimierte Synthesen für Methyl- und Natrium-2-oxo-d-gluconat als Synthesebausteine. J Prakt Chem 334:537–539
Liang N, Wang M, Liu L, Du G, Chen J (2008) Enhancing alpha ketoglutaric acid production in Torulopsis glabrata: increase of acetyl-CoA availability. Wei Sheng Wu Xue Bao 48:874–878
Liu L, Li Y, Zhu Y, Du G, Chen J (2007) Redistribution of carbon flux in Torulopsis glabrataby altering vitamin and calcium level. Metab Eng 9:21–29
Lockwood LB, Stodola FH (1946) Preliminary studies on the production of α-ketoglutaric acid by Pseudomonas fluorescens. J Biol Chem 164:81–83
Maldonado P, Desmarquest J-P, Gaillardin C, Binet D (1973) Process for getting diploid Candida lipolyticastrains for α-ketoglutarate fermentation. US Patent 3930946, Institute Francaise du Petrole, France
Manufacturingchemist (2008) White biotechnology for greener chemistry. http://www.manufacturingchemist.com/technical/article_page/White_biotechnology_for_greener_chemistry/40815. Accessed 20 Feb 2012
Medicalnewstoday (2008) Isocitric acid from fermentation of sunflower oil: a new building block for pharma? http://www.medicalnewstoday.com/articles/96266.php. Accessed 20 Feb 2012
Misenheimer TJ, Anderson RF, Lagoda AA, Tyler DD (1965) Production of 2-ketogluconic acid by Serratia marcescens. Appl Environ Microbiol 13:393–396
Moresi M, Sappino F (2000) Electrodialytic recovery of some fermentation products from model solutions: techno-economic feasibility study. J Memb Sci 164:129–140
Nakahara T, Kaimaktchiev AC, Oogaki-Chino M, Uchida Y, Tabuchi T (1987) Isocitric acid production from n-alkanes by Candida catenulata. Agric Biol Chem 51:2111–2116
Novalic S, Jagschits F, Okwor J, Kulbe KD (1995) Behaviour of citric acid during electrodialysis. J Memb Sci 108:201–205
Oogaki M, Inoue M, Kaimaktchiev AC, Nakahara T, Tabuchi T (1983) Production of isocitric acid from glucose by Candida ravautii. Agric Biol Chem 48:789–795
Otto C (2010) Gezielte Beeinflussung der Ausbeute und des Nebenproduktspektrums der α-Ketoglutarat-Synthese in Yarrowia lipolytic mittels “metabolic engineering”. PhD Thesis, Dresden University of Technology, Dresden
Otto C, Yovkova V, Barth G (2011) Overproduction and secretion of α-ketoglutaric acid by microorganisms. Appl Microbiol Biotechnol 92:689–695
Otto C, Yovkova V, Aurich A, Mauersberger S, Barth G (2012) Variation of the by-product spectrum during α-ketoglutaric acid production from raw glycerol by overexpression of fumarase and pyruvate carboxylase in Yarrowia lipolytica. Appl Microbiol Biotechnol. doi:10.1007/s00253-012-4085-1
Physorg (2012) Isocitric acid from fermentation of sunflower oil – a new building block for pharma? http://www.physorg.com/news121343388.html. Accessed 20 Feb 2012.
Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke WF, Ehrenreich A et al (2005) Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol 23:195–200
Rapp HJ (1995) Die Elektrodialyse mit bipolaren Membranen Theorie und Anwendung. PhD Thesis, Universität Stuttgart, Stuttgart
Sakaguchi K, Abe S, Beppu T (1960) Method of producing allo-isocitric acid by fermentation. US Patent 2949404 16.08.1960
Schmidt S, Teich L, Khodja M, Sicker D (2005a) Synthesis of pyranoid sugar α-amino acid derivatives from 2-oxo-d-gluconic acid. Lett Org Chem 2:165–171
Schmidt S, Wilde H, Hunger J, Sicker D (2005b) Synthese furanoider Zuckeraminosäuren ausgehend von fermentativ gewonnener 2-Oxo-d-gluconsäure. Z Naturforsch B: J Chem Sci 60:1168–1174
Schwesinger H, Dalski A, Sicker D, Wilde H, Mann G (1992) Synthesen auf der Basis von 2-Oxoglutarsäure. I. Synthese substituierter 2-Nitrophenylhydrazone von 2-Oxodicarbonsäureestern und Untersuchung ihres Tautomerie- und Absorptionsverhaltens. J Prakt Chem 334:257–264
Specht R (2004) Produktion von 2-Oxoglutarsäure aus Pflanzenölen unter der Verwendung der Hefeart Yarrowia lipolytica. Diplomarbeit, Technische Universität Dresden, Dresden
Stottmeister U, Hoppe K (1991) Organische Genuss-Säuren. In: Lebensmittel-Biotechnologie. H. Ruttloff (Ed.) Akademie Verlag Berlin, pp 516–557
Stottmeister U, Behrens U, Weißbrodt E, Barth G, Franke-Rinker D, Schulze E (1982) Nutzung von Paraffinen und anderen Nichtkohlenhydrat-Kohlenstoffquellen zur mikrobiellen Citronensauresynthese. Z Allg Mikrobiol 22:399–424
Stottmeister U, Puschendorf K, Thiersch A, Berger R, Düresch R, Richter H, Schmidt JST, Iske U, Jechorek M, Uhlig H (1990) Verfahren zur Gewinnung von 2-Oxogluconsäure mittels Bakterien, DD 278 362 A1 IBT/UFZ
Stottmeister U, Schoenfelder M, Wilde H, Sicker D, Andersch J (2001) Novel 3-substituted 1,2,4-benzotriazines. A method for their production and the use thereof for the treatment and prophylaxis of tumours, EP20000985213.
Stottmeister U, Aurich A, Wilde H, Andersch J, Schmidt S, Sicker D (2005) White biotechnology for green chemistry: fermentative 2-oxocarboxylic acids as novel building blocks for subsequent chemical syntheses. J Ind Microbiol Biotechnol 32:651–664
Stubbs JJ, Lockwood LB, Roe ET, Tabenkin B, Ward GE (1940) Ketogluconic acid from glucose. Ind Eng Chem 32:1626–1631
Tabaka K, Kimura K, Yamaguchi Y (1969) Process for producing l-glutamic acid and α-ketoglutaric acid. US Patent 3450599, Kyowa Hakko Kogyo, Tokyo
Tongwen X, Weihua Y (2002) Citric acid production by electrodialysis with bipolar membranes. Chem Eng Process 41(6):519–524
Tsugawa, R., Nakase, T., Yamashita, K (1969) Production of α-ketoglutaric acid by fermentation of hydrocarbons, US Patent 3616213 Ajinomoto Co. Inc., Tokyo
Verseck S, Karau A, Weber M (2007) Fermentative Herstellung von alpha-Ketoglutarsäure. DE 10 2007 051 451.6, Evonik Degussa GmbH, Essen
Verseck S, Karau A, Weber M (2009) Fermentative production of alpha-ketoglutaric acid. WO2009053489, Evonik Degussa GmbH, Essen
Vickery HB (1962) A suggested new nomenclature for the isomers of isocitric acid. J Biol Chem 237:1739–41
Vogelbusch (2012) Biocommodities. http://www.vogelbusch-biocommodities.com/en/index.php. Accessed 20 Feb 2012
Weißbrodt E, Barth G, Weber H, Stottmeister U, Düresch R, Richter P (1988) Production of 2-oxoglutaric acid by yeasts. Patent DD 267 999 IBT/UFZ, dated 06.01.1988
Yovkova V (2011) Genetische Optimierung der Hefe Yarrowia lipolytica für die biotechnologische Gewinnung von α-Ketoglutarsäure. PhD Thesis, Dresden University of Technology, Dresden
Zhang D, Liang N, Shi Z, Liu L, Chen J, Du G (2009) Enhancement of α-ketoglutarate production in Torulopsis glabrata: redistribution of carbon flux from pyruvate to α-ketoglutarate. Biotechnol Bioproc Eng 14:134–139
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer Science+Business Media Dordrecht
About this chapter
Cite this chapter
Aurich, A. et al. (2012). Microbiologically Produced Carboxylic Acids Used as Building Blocks in Organic Synthesis. In: Wang, X., Chen, J., Quinn, P. (eds) Reprogramming Microbial Metabolic Pathways. Subcellular Biochemistry, vol 64. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-5055-5_19
Download citation
DOI: https://doi.org/10.1007/978-94-007-5055-5_19
Published:
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-007-5054-8
Online ISBN: 978-94-007-5055-5
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)