Skip to main content

Persistent Plant Viruses: Molecular Hitchhikers or Epigenetic Elements?

  • Chapter
  • First Online:
Book cover Viruses: Essential Agents of Life

Abstract

Many plants harbor persistent cytoplasmic viruses that are not transmitted horizontally and do not move from cell to cell. These viruses have extensive longevity within individual plant cultivars. Based on phylogenetic evidence they appear to undergo rare transmission events between plants and fungi. Very few functions have been attributed to persistent viruses in plants, but their longevity and protection from the plant’s immune system suggest that they provide a selective advantage for their hosts, at least under some conditions. In addition, some persistent plant virus sequences have been found in plant genomes and are expressed as functional genes. Hence, rather than simply molecular hitchhikers, they may be cytoplasmic epigenetic elements that could provide genetic information to their plant hosts.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Alabdullah A, Elbeaino T, Digiaro M (2010) Partial nucleotide sequence of a putative partitivirus from Pittosporum tobira. J Plant Pathol 92(2):537–542

    CAS  Google Scholar 

  • Arancibia RA, Valverde RA, Can F (1995) Properties of a cryptic virus from pepper (Capsicum annuum). Plant Pathol 44:164–168

    Google Scholar 

  • Blanc S (2007) Virus transmission – getting in and out. In: Waigman E, Heinlein M (eds) Viral transport in plants. Plant cell mongrams, vol 7. Springer, Berlin/Heidelberg, pp 1–28

    Chapter  Google Scholar 

  • Boccardo G, Milne RG, Luisoni E, Lisa V, Accotto GP (1985) Three seedborne cryptic viruses containing double-stranded RNA isolated from white clover. Virology 147:29–40

    Article  PubMed  CAS  Google Scholar 

  • Boccardo G, Lisa V, Luisoni E, Milne RG (1987) Cryptic plant viruses. Adv Virus Res 32:171–214

    Article  PubMed  CAS  Google Scholar 

  • Chiba S, Kondo H, Tani A, Saisho D, Sakamoto W, Kanematsu S, Suzuki N (2011) Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes. PLoS Pathog 7(7):16

    Article  Google Scholar 

  • Coutts RHA (2005) First report of an Endornavirus in the Cucurbitaceae. Virus Genes 31(3):361–362

    Article  PubMed  CAS  Google Scholar 

  • Elbeaino T, Kubaa RA, Digiaro M, Minafra A, Martelli GP (2011) The complete nucleotide sequence and genome organization of fig cryptic virus, a novel bipartite dsRNA virus infecting fig, widely distributed in the Mediterranean basin. Virus Genes 42:415–421

    Article  PubMed  CAS  Google Scholar 

  • Fukuhara T, Moriyama H (2008) Endornaviruses. In: Mahy BWJ, van Regenmortel MHV (eds) Encyclopedia of virology, vol 2. Elsevier, Oxford, pp 109–116

    Chapter  Google Scholar 

  • Fukuhara T, Koga R, Aioki N, Yuki C, Yamamoto N, Oyama N, Udagawa T, Horiuchi H, Miyazaki S, Higashi Y, Takeshita M, Ikeda K, Arakawa M, Matsumoto N, Moriyama H (2006) The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties. Arch Virol 151:995–1002

    Article  PubMed  CAS  Google Scholar 

  • Ghabrial SA (1998) Origin, adaptation and evolutionary pathways of fungal viruses. Virus Genes 16:119–131

    Article  PubMed  CAS  Google Scholar 

  • Gibbs MJ, Koga R, Moriyama H, Pfeiffer P, Fukuhara T (2000) Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus. J Gen Virol 81:227–233

    PubMed  CAS  Google Scholar 

  • Gray SM, Banerjee N (1999) Mechanisms of arthropod transmission of plant and animal viruses. Microbiol Mol Biol Rev 63(1):128–148

    PubMed  CAS  Google Scholar 

  • Grill LK, Garger SJ (1981) Identification and characterization of double-stranded RNA associated with cytoplasmic male sterility in Vicia faba. Proc Natl Acad Sci USA 78(11):7043–7046

    Article  PubMed  CAS  Google Scholar 

  • Hohn T, Richert-Pöggeler KR, Staginnus C, Harper G, Schwarzacher T, Teo CH, Teycheney P-Y, Iskra-Caruana M-L, Hull R (2008) Evolution of integrated plant viruses. In: Roossinck MJ (ed) Plant virus evolution. Springer, Heidelberg, pp 53–81

    Chapter  Google Scholar 

  • Horiuchi H, Udagawa T, Koga R, Moriyama H, Fukuhara T (2001) RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice. Plant Cell Physiol 42(2):197–203

    Article  PubMed  CAS  Google Scholar 

  • Ishihara J, Pak JY, Fukuhara T, Nitta T (1992) Association of particles that contain double-stranded RNAs with algal chloroplasts and mitochondria. Planta 187:475–482

    Article  CAS  Google Scholar 

  • Kankanala P, Mosquera G, Khang CH, Valdovinos-Ponce G, Valent B (2009) Cellular and molecular analyses of biotrophic invasion in rice blast disease. In: Wang G-L, Valent B (eds) Advances in genetics, genomics and control of rice blast disease. Springer, Dordrecht, pp 83–91. doi:10.1007/978-1-4020-9500-9_9

    Chapter  Google Scholar 

  • Kassanis B, White RF, Woods RD (1977) Beet cryptic virus. Phytopathol Z 90:350–360

    Article  Google Scholar 

  • King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) (2012) Virus taxonomy ninth report of the international committee on taxonomy of viruses, vol 9. Elsevier Academic Press, San Diego

    Google Scholar 

  • Koga R, Horiuchi H, Fukuhara T (2003) Double-stranded RNA replicons associated with chloroplasts of a green alga, Bryopsis cinicola. Plant Mol Biol 51:991–999

    Article  PubMed  CAS  Google Scholar 

  • Li L, Tiam Q, Du Z, Duns GJ, Chen J (2009) A novel double stranded RNA virus detected in Primula malacoides is a plant-isolated partitivirus closely related to partivirus infecting fungal species. Arch Virol 154:565–572

    Article  PubMed  CAS  Google Scholar 

  • Liu W, Chen J (2009) A double-stranded RNA as the genome of a potential virus infecting Vicia faba. Virus Genes 39:126–131

    Article  PubMed  CAS  Google Scholar 

  • Liu H, Fu Y, Jiang D, Li G, Xie J, Cheng J, Pend Y, Ghabriel SA, Yi X (2010) Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes. J Virol 84(22):11879–11887

    Google Scholar 

  • Marienfeld JR, Unseld M, Brandt P, Brennicke A (1997) Viral nucleic acid sequence transfer between fungi and plants. Trends Genet 13(7):260–261

    Article  PubMed  CAS  Google Scholar 

  • Márquez LM, Redman RS, Rodriguez RJ, Roossinck MJ (2007) A virus in a fungus in a plant – three way symbiosis required for thermal tolerance. Science 315:513–515

    Article  PubMed  Google Scholar 

  • Martin RR, Zhou J, Tzanetakis IE (2011) Blueberry latent virus: an amalgam of the Partitiviridae and Totiviridae. Virus Res 155:175–180

    Article  PubMed  CAS  Google Scholar 

  • Martín-Hernández AM, Baulcombe DC (2008) Tobacco rattle virus 16-kilodalton protein encodes a suppressor of RNA silencing that allows transient viral entry in meristems. J Virol 82(8):4064–4071

    Article  PubMed  Google Scholar 

  • Miyazaki S, Iwabuchi K, Pak J-Y, Fukuhara T, Nitta T (1996) Selective occurrence of endogenous double-stranded RNAs in insects. Insect Biochem Mol Biol 26(8–9):955–961

    Article  CAS  Google Scholar 

  • Moriyama H, Nitta T, Fukuhara T (1995) Double-stranded RNA in rice: a novel RNA replicon in plants. Mol Gen Genet 248:364–369

    Article  PubMed  CAS  Google Scholar 

  • Nakatsukasa-Akune M, Yamashita K, Shimoda Y, Uchiumi T, Abe M, Aoki T, Kamizawa A, S-i A, Higashi S, Suzuki A (2005) Suppression of root nodule formation by artificial expression of the TrEnodDR1 (coat protein of White clover cryptic virus 2) gene in Lotus japonicus. Mol Plant-Microbe Interact 18(10):1069–1080

    Article  PubMed  CAS  Google Scholar 

  • Natsuaki T, Yamashita S, Doi Y, Okuda S, Teranaka M (1983) Radish yellow edge virus, a seed borne virus with double-stranded RNA of a possible new group. Ann Phytopathol Soc Jpn 49:593–599

    Article  CAS  Google Scholar 

  • Nibert ML, Woods KM, Upton SJ, Ghabrial SA (2009) Cryspovirus: a new genus of protozoan viruses in the family Partitiviridae. Arch Virol 154:1959–1965

    Article  PubMed  CAS  Google Scholar 

  • Okada R, Kiyota E, Sabanadzovic S, Moriyama H, Fukuhara T, Saha P, Roossinck MJ, Severin A, Valverde RA (2011) Bell pepper endornavirus: molecular and biological properties, and occurrence in the genus Capsicum. J Gen Virol 92:2664–2673

    Article  PubMed  CAS  Google Scholar 

  • Osaki H, Kudo A, Ohtsu Y (1998) Nucleotide sequence of seed- and pollen-transmitted double-stranded RNA, which encodes a putative RNA-dependent RNA polymerase, detected from Japense Pear. Biosci Biotechnol Biochem 62(11):2101–2106

    Article  PubMed  CAS  Google Scholar 

  • Roossinck MJ (2010) Lifestyles of plant viruses. Philos Trans R Soc B 365:1899–1905

    Article  Google Scholar 

  • Roossinck MJ (2011) The good viruses: viral mutualistic symbioses. Nat Rev Microbiol 9(2):99–108

    Article  PubMed  CAS  Google Scholar 

  • Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(S1):81–88

    Article  PubMed  Google Scholar 

  • Roossinck MJ, Sabanadzovic S, Okada R, Valverde RA (2011) The remarkable evoluntionary history of endornaviruses. J Gen Virol 92:2674–2678

    Article  PubMed  CAS  Google Scholar 

  • Sabanadzovic S, Ghanem-Sabanadzovic NA (2008) Molecular characterization and detection of a tripartite cryptic virus from rose. J Plant Pathol 90(2):287–293

    CAS  Google Scholar 

  • Sabanadzovic S, Valverde RA (2011) Properties and detection of two cryptoviruses from pepper (Capsicum annuum). Virus Genes 43:307–312

    Article  PubMed  CAS  Google Scholar 

  • Salem NM, Golino DA, Falk BW, Rowhani A (2008) Complete nucleotide sequence and genome characterization of a novel double-stranded RNA virus infecting Rosa multiflora. Arch Virol 153:455–462

    Article  PubMed  CAS  Google Scholar 

  • Segundo E, Carmona MP, Sáez E, Velasco L, Martín G, Ruiz L, Janssen D, Cuadrado IM (2008) Occurrence and incidence of viruses infecting green beans in South-Eastern Spain. Eur J Plant Pathol 122:579–591

    Article  Google Scholar 

  • Szegö A, Tóth EK, Potyondi L, Lukás N (2005) Detection of high molecular weight dsRNA persisting in Dianthus species. Acta Biol Szeged 49(1–2):17–19

    Google Scholar 

  • Szegö A, Ilyés P, Lukács N, Tóth EK, Potyondi L (2006) Long term survival of cryptic viruses in aseptically grown in vitro propagated plants. Acta Hortic 725:505–510

    Google Scholar 

  • Szegö A, Enünlü N, Deshmukh SD, Veliceasa D, Ev H-G, Kühne T, Ilyés P, Potyondi L, Medzihradszky K, Lukács N (2010) The genome of Beet cryptic virus 1 shows high homology to certain cryptoviruses present in phylogenetically distant hosts. Virus Genes 40:267–276

    Article  PubMed  Google Scholar 

  • Tzanetakis IE, Price R, Martin RR (2008) Nucleotide sequence of the tripartite Fragaria chiloensis cryptic virus and presence of the virus in the Americas. Virus Genes 36:267–272

    Article  PubMed  CAS  Google Scholar 

  • Valverde RA, Gutierrez DL (2007) Transmission of a dsRNA in bell pepper and evidence that it consists of the genome of an endornavirus. Virus Genes 35:399–403

    Article  PubMed  CAS  Google Scholar 

  • Valverde RA, Gutierrez DL (2008) Molecular and biological properties of a putative partitivirus from jalapeño pepper (Capsicum annuum L.). Rev Mex Fitopat 26(1):1–6

    Google Scholar 

  • Veliceasa D, Enünlü N, Kós PB, Köster S, Beuther E, Morgun B, Deshmukh SD, Lukács N (2006) Searching for a new putative cryptic virus in Pinus sylvestris L. Virus Genes 32:177–186

    Article  PubMed  CAS  Google Scholar 

  • Villanueva F, Sabanadzovic S, Valverde RA, Navas-Castillo J (2012) Complete genome sequence of a double-stranded RNA virus from avocado. J Virol 86(2):1282–1283

    Article  PubMed  CAS  Google Scholar 

  • Wakarchuk DA, Hamilton RI (1985) Cellular double-stranded RNA in Phaseolus vulgaris. Plant Mol Biol 5:55–63

    Article  CAS  Google Scholar 

  • Wang M-B, Metzlaff M (2005) RNA silencing and antiviral defense in plants. Curr Opin Plant Biol 8:216–222

    Article  PubMed  Google Scholar 

  • Willenborg J, Menzel W, Vetten H-J, Maiss E (2009) Molecular characterization of two alphacryptovirus dsRNAs isolated from Daucus carota. Arch Virol 154:541–543

    Article  PubMed  CAS  Google Scholar 

  • Zabalgogeazcoa IA, Gildow FE (1992) Double-stranded ribonucleic acid in ‘Barsoy’ barley. Plant Sci 83:187–194

    Article  CAS  Google Scholar 

  • Ziegler A, Matousek J, Steger G, Schubert J (2012) Complete nucleotide sequence of a cryptic virus from hemp (Cannabis sativa). Arch Virol 157:383–385

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

The author thanks Dr. X. Bao for careful reading of the manuscript, and Dr. L. Márquez for art work. This work was supported in part by the Samuel Roberts Noble Foundation; the Pennsylvania State University; the National Science Foundation grant numbers EF-0627108, EPS-0447262, IOS-0950579 and IOS-1157148; and the United States Department of Agriculture grant number OKLR-2007-01012.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marilyn J. Roossinck Ph.D. .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Roossinck, M.J. (2012). Persistent Plant Viruses: Molecular Hitchhikers or Epigenetic Elements?. In: Witzany, G. (eds) Viruses: Essential Agents of Life. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-4899-6_8

Download citation

Publish with us

Policies and ethics