Abstract
Numerous of clustering methods are proficiently work for low dimensional data. However Clustering High dimensional data is still challenging related to time complexity and accuracy. This paper presents the performance efficiency and effectiveness of K-means and Agglomerative hierarchical clustering methods based on Euclidean distance function and quality measures Precision, Recall and F-measure for Microarray datasets by varying cluster values. Efficiency concerns about computational time required to build up dataset and effectiveness concerns about accuracy to cluster the data. Experimental results on Microarray datasets reveal that K-means clustering algorithm is favorable in terms of effectiveness where as efficiency of clustering algorithms depends on dataset used for empirical study.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Jiang, D., Tang, C., Zhang, A.: Cluster analysis for gene expression data: a survey. IEEE Trans. Knowl. Data Eng. 16(11), 1370–1386 (November 2004). doi:ieeecomputersociety.org/10.1109/TKDE
Steinbach, M., Ertöz, L., Kumar, V.: The challenges of clustering high dimensional data. In: New Vistas in Statistical Physics—Applications in Econophysics, Bioinformatics, and Pattern Recognition. Springer (2004)
Xu, R., Wunsch, D., Survey of clustering algorithms. IEEE Trans. Neural Netw. 16(3), 645–678 (May 2005)
Steinbach, M., Karypis, G., Kumar, V.: A comparison of document clustering techniques. In: KDD Workshop on Text Mining (2000)
Onoda, T., Sakai, M., Independent component analysis based seeding method for k-means clustering. In: IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology (2011). doi:10.1109/WI-IAT.2011.29
Dhillon, I., Modha, D.: Concept decompositi-on for large sparse text data using clustering. Mach. Learn. 42, 143–175 (2001)
Rokach, L., Maimon, O.: Clustering Methods Data Mining and Knowledge Discovery Handbook. Springer (2005)
Achtert, E., Goldhofer, S., Kriegel,H.-P., Schubert, E., Zimek, A.: Evaluation of clusterings—metrics and visual support. In: Proceedings of the 28th International Conference on Data Engineering (ICDE), Washington, DC (2012)
Bourennani, F., Pu, K.Q., Zhu, Y.: Visualization and integration of databases using self-organizing map. IEEE Int. Conf. Adv. Databases Knowl. Data Appl. 155–160 (2009). doi:10.1109/DBKDA.2009.30
Greenacre, M., Primicerio, R.: Measures of Distance between Samples: Euclidean, pp. 47–59. Fundacion BBVA Publication (December 2013). ISBN:978-84-92937-50-9
Bouckaert, R.R., Frank, E., Hall, M., Kirkby, R., Reutemann, P., Seewald, A., Scuse, D.: WEKA Manual for Version 3-7-10, July 31, 2013
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer India
About this paper
Cite this paper
Chormunge, S., Jena, S. (2016). Performance Efficiency and Effectiveness of Clustering Methods for Microarray Datasets. In: Nagar, A., Mohapatra, D., Chaki, N. (eds) Proceedings of 3rd International Conference on Advanced Computing, Networking and Informatics. Smart Innovation, Systems and Technologies, vol 44. Springer, New Delhi. https://doi.org/10.1007/978-81-322-2529-4_58
Download citation
DOI: https://doi.org/10.1007/978-81-322-2529-4_58
Published:
Publisher Name: Springer, New Delhi
Print ISBN: 978-81-322-2528-7
Online ISBN: 978-81-322-2529-4
eBook Packages: EngineeringEngineering (R0)