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Conformal Mapping via Metric Optimization with Application for Cortical Label Fusion

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Information Processing in Medical Imaging (IPMI 2013)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7917))

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Abstract

In this paper we develop a novel approach for computing conformal maps between anatomical surfaces with the ability of aligning anatomical features and achieving greatly reduced metric distortion. In contrast to conventional approaches that focused on conformal maps to the sphere or plane, our method computes the conformal map between surfaces in the embedding space formed the intrinsically defined Laplace-Beltrami (LB) eigenfunctions. Utilizing the power of LB eigenfunctions as informative descriptors of global geometry, the conformal maps computed by our method can effectively align anatomical features on cortical surfaces. By computing such feature-aware conformal maps to a group-wisely optimal atlas surface, which is also computed with metric optimization in the LB embedding space, we develop a fully automated system for cortical labeling with the fusion of labels on a large number of atlas surfaces. In our experiments, we build our system with 40 labeled surfaces and demonstrate its excellent performance with leave-one-out cross validation. We also applied the automated labeling system to cortical surfaces reconstructed from MR scans of 50 patients with Alzheimer’s disease (AD) and 50 normal controls (NC) to illustrate its robustness and effectiveness in clinical data analysis.

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References

  1. Rustamov, R.M.: Laplace-Beltrami eigenfunctions for deformation invariant shape representation. In: Proc. Eurograph. Symp. on Geo. Process., pp. 225–233 (2007)

    Google Scholar 

  2. Lai, R., Shi, Y., Scheibel, K., Fears, S., Woods, R., Toga, A., Chan, T.: Metric-induced optimal embedding for intrinsic 3D shape analysis. In: Proc. CVPR, pp. 2871–2878 (2010)

    Google Scholar 

  3. Hurdal, M.K., Stephenson, K.: Cortical cartography using the discrete conformal approach of circle packings. NeuroImage 23, S119–S128 (2004)

    Google Scholar 

  4. Gu, X., Wang, Y., Chan, T.F., Thompson, P.M., Yau, S.T.: Genus zero surface conformal mapping and its application to brain surface mapping. IEEE Trans. Med. Imag. 23(8), 949–958 (2004)

    Article  Google Scholar 

  5. Wang, Y., Lui, L.M., Chan, T.F., Thompson, P.M.: Optimization of brain conformal mapping with landmarks. In: Duncan, J.S., Gerig, G. (eds.) MICCAI 2005, Part II. LNCS, vol. 3750, pp. 675–683. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  6. Reuter, M., Wolter, F., Peinecke, N.: Laplace-Beltrami spectra as Shape-DNA of surfaces and solids. Computer-Aided Design 38, 342–366 (2006)

    Article  Google Scholar 

  7. Qiu, A., Bitouk, D., Miller, M.I.: Smooth functional and structural maps on the neocortex via orthonormal bases of the Laplace-Beltrami operator. IEEE Trans. Med. Imag. 25(10), 1296–1306 (2006)

    Article  Google Scholar 

  8. Shi, Y., Lai, R., Morra, J., Dinov, I., Thompson, P., Toga, A.: Robust surface reconstruction via Laplace-Beltrami eigen-projection and boundary deformation. IEEE Trans. Med. Imag. 29(12), 2009–2022 (2010)

    Article  Google Scholar 

  9. Shi, Y., Lai, R., Gill, R., Pelletier, D., Mohr, D., Sicotte, N., Toga, A.W.: Conformal metric optimization on surface (CMOS) for deformation and mapping in Laplace-Beltrami embedding space. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part II. LNCS, vol. 6892, pp. 327–334. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  10. Fischl, B., van der Kouwe, A., Destrieux, C., Halgren, E., Sagonne, F., Salat, D.H., Busa, E., Seidman, L.J., Goldstein, J., Kennedy, D., Caviness, V., Makris, N., Rosen, B., Dale, A.M.: Automatically parcellating the human cerebral cortex. Cerebral Cortex 14(1), 11–22 (2004)

    Article  Google Scholar 

  11. Wan, J., Carass, A., Resnick, S., Prince, J.: Automated reliable labeling of the cortical surface. In: Proc. ISBI, pp. 440–443 (2008)

    Google Scholar 

  12. Yeo, B., Sabuncu, M., Vercauteren, T., Ayache, N., Fischl, B., Golland, P.: Spherical demons: Fast diffeomorphic landmark-free surface registration. IEEE Trans. Med. Imag. 29(3), 650–668 (2010)

    Article  Google Scholar 

  13. Rohlfing, T., Brandt, R., Menzel, R., Maurer Jr., C.R.: Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains

    Google Scholar 

  14. Sabuncu, M., Yeo, B., Van Leemput, K., Fischl, B., Golland, P.: IEEE Trans. Med. Imag. 29(10), 1714–1729 (2010)

    Article  Google Scholar 

  15. Wang, H., Suh, J., Das, S., Pluta, J., Craige, C., Yushkevich, P.: Multi-atlas segmentation with joint label fusion. IEEE Trans. Pattern Anal. Machine Intell. (2012), doi:10.1109/TPAMI.2012.143

    Google Scholar 

  16. Shattuck, D., Mirza, M., Adisetiyo, V., et al.: Construction of a 3D probabilistic atlas of human brain structures. NeuroImage 39(3), 1064–1080 (2008)

    Article  Google Scholar 

  17. Mueller, S., Weiner, M., Thal, L., Petersen, R.C., Jack, C., Jagust, W., Trojanowski, J.Q., Toga, A.W., Beckett, L.: The Alzheimers disease neuroimaging initiative. Clin. North Am. 15, 869–877, xi–xii (2005)

    Google Scholar 

  18. Shi, Y., Lai, R., Toga, A.: Cortical surface reconstruction via unified Reeb analysis of geometric and topological outliers in magnetic resonance images. IEEE Trans. Med. Imag. (2012), doi:10.1109/TMI.2012.2224879

    Google Scholar 

  19. Klein, A., Ghosh, S.S., Avants, B., Yeo, B., Fischl, B., Ardekani, B., Gee, J.C., Mann, J., Parsey, R.V.: Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51, 214–220 (2010)

    Article  Google Scholar 

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Shi, Y., Lai, R., Toga, A.W. (2013). Conformal Mapping via Metric Optimization with Application for Cortical Label Fusion. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds) Information Processing in Medical Imaging. IPMI 2013. Lecture Notes in Computer Science, vol 7917. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38868-2_21

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  • DOI: https://doi.org/10.1007/978-3-642-38868-2_21

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-38867-5

  • Online ISBN: 978-3-642-38868-2

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