Skip to main content

A Novel Cell Segmentation, Tracking and Dynamic Analysis Method in Time-Lapse Microscopy Based on Cell Local Graph Structure and Motion Features

  • Conference paper

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 321))

Abstract

In this paper, a novel cell segmentation, tracking and dynamic analysis vision-based method is proposed,which can be used to analyze cell population morphology and dynamic change of the cell sequence images obtained by time-lapse-microscopy. Firstly, in process of the segmentation, a new method is introduced to identify touching cells based on the relative position of the same cell region between the adjacent frames. Secondly, a novel cell tracking method, which combines cell local graph structure with motion features, is also presented to track the fast moving cell population and to improve the cell tracking accuracy. Experiment results show that this proposed method can be used to segment the touching cells correctly and has an increase of 10.66% and 5.74% tracking accuracy compared with the two traditional methods. Furthermore, the dynamic analysis results can be further used for biological researches and applications.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Wang, Q., Niemi, J., Tan, C.M., You, L., West, M.: Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry Part A 70A, 101–110 (2010)

    Google Scholar 

  2. Richard, M.J., Danny, C., Nie, L.: Live-cell tracking using SIFT Features in DIC Microscopic Videos. IEEE Transactions on Biomedical Engineering 57, 2219–2227 (2010)

    Article  Google Scholar 

  3. Akberdewan, M.A., Ahmad, M.O.: Tracking biological cells in Time-lapse Microscopy: An adaptive technique combining motion and topological features. IEEE Transcations on Biomedical Engineering 58, 1637–1647 (2001)

    Google Scholar 

  4. Kanade, T., Yin, Z.Z., Bise, R., Huh, S., Eom, S.: Cell image analysis: Algorithms, System and Applications. Applications of Computer Vision, 374–381 (2011)

    Google Scholar 

  5. Debeir, O., Van Hum, P., Kiss, R., Decaestecker, C.: Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes. IEEE Transactions on Medical Imaging 24, 697–711 (2005)

    Article  Google Scholar 

  6. Zimmer, C., Labruyere, E., M-Yedid, V., Guillen, N., O-Marin, J.C.: Segmentation and tracking of migrating cells in video microscopy with parametric active contours: a tool for cell-based drug testing. IEEE Transactions on Medical Imaging 21, 1212–1221 (2002)

    Article  Google Scholar 

  7. Padfield, D., Rittscher, J., Thomas, N., Roysam, B.: Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. Medical Image Analysis 13, 143–155 (2009)

    Article  Google Scholar 

  8. Zhang, L., Xiong, H., Zhang, K., Zhou, X.: Graph theory application in cell nucleus segmentation, tracking and identification. In: Proceeding of the 7th IEEE International Conference on BIBE, pp. 226–232 (2007)

    Google Scholar 

  9. Chowdhury, A.S., Chatterjee, R., Ghosh, M., Ray, N.: Cell Cracking In Video Microscopy Using Bipartite Graph Matching. In: IEEE International Conference on Pattern Recognition, ICPR, pp. 2456–2459 (2010)

    Google Scholar 

  10. Malpica, N., de Solorzano, C.O., Vaquero, J.J., Santos, A.S., Vallcorba, I., Garcia-Sagredo, J.M., de Poze, F.: Applying Watershed Algorithms to the Segmentation of Clustered Nuclei. Cytometry 28, 289–297 (1997)

    Article  Google Scholar 

  11. Liu, M., Roy-Chowdhury, A., Gonehal, V.R.: Exploiting local structure for tracking plant cells in noisy images. In: IEEE International Conference on Image Processing, ICIP, pp. 1765–1768 (2009)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Zhu, C., Guan, Q., Chen, S. (2012). A Novel Cell Segmentation, Tracking and Dynamic Analysis Method in Time-Lapse Microscopy Based on Cell Local Graph Structure and Motion Features. In: Liu, CL., Zhang, C., Wang, L. (eds) Pattern Recognition. CCPR 2012. Communications in Computer and Information Science, vol 321. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-33506-8_45

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-33506-8_45

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-33505-1

  • Online ISBN: 978-3-642-33506-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics