Skip to main content

Noncollective Communicator Creation in MPI

  • Conference paper
Recent Advances in the Message Passing Interface (EuroMPI 2011)

Part of the book series: Lecture Notes in Computer Science ((LNPSE,volume 6960))

Included in the following conference series:

Abstract

MPI communicators abstract communication operations across application modules, facilitating seamless composition of different libraries. In addition, communicators provide the ability to form groups of processes and establish multiple levels of parallelism. Traditionally, communicators have been collectively created in the context of the parent communicator. The recent thrust toward systems at petascale and beyond has brought forth new application use cases, including fault tolerance and load balancing, that highlight the ability to construct an MPI communicator in the context of its new process group as a key capability. However, it has long been believed that MPI is not capable of allowing the user to form a new communicator in this way. We present a new algorithm that allows the user to create such flexible process groups using only the functionality given in the current MPI standard. We explore performance implications of this technique and demonstrate its utility for load balancing in the context of a Markov chain Monte Carlo computation. In comparison with a traditional collective approach, noncollective communicator creation enables a 30% improvement in execution time through asynchronous load balancing.

This work was supported through a resource grant from the Argonne Leadership Computing Facility (ALCF) and by the U.S. Department of Energy under contracts DE-AC02-06CH11357, DE-AC05-00OR22725, and DE-ACO6-76RL01830.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. MPICH2 Project Website (June 2011), http://www.mcs.anl.gov/research/projects/mpich2/

  2. Dickson, A., Maienschein-Cline, M., Tovo-Dwyer, A., Hammond, J.R., Dinner, A.R.: Flow-dependent unfolding and refolding of an RNA by nonequilibrium umbrella sampling. ArXiv e-prints (1104.5180), cond–mat.stat–mech (April 2011)

    Google Scholar 

  3. Graham, R.L., Keller, R.: Dynamic communicators in MPI. In: Ropo, M., Westerholm, J., Dongarra, J. (eds.) PVM/MPI. LNCS, vol. 5759, pp. 116–123. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  4. Gropp, W.D., Lusk, E.: Fault tolerance in MPI programs. International Journal of High Performance Computer Applications 18(3), 363–372 (2004)

    Article  Google Scholar 

  5. Kamiya, M., Hirata, S., Valiev, M.: Fast electron correlation methods for molecular clusters without basis set superposition errors. The Journal of Chemical Physics 128(7), 74103 (2008)

    Article  Google Scholar 

  6. MPI Forum: MPI: A Message-Passing Interface Standard. Version 2.2 (September 4, 2009)

    Google Scholar 

  7. Nieplocha, J., Carpenter, B.: ARMCI: A portable remote memory copy library for distributed array libraries and compiler run-time systems. In: Rolim, J.D.P. (ed.) IPPS-WS 1999 and SPDP-WS 1999. LNCS, vol. 1586, pp. 533–546. Springer, Heidelberg (1999), doi:10.1007/BFb0097937

    Chapter  Google Scholar 

  8. Nieplocha, J., Krishamoorthy, S., Valiev, M., Krishnan, M., Palmer, B., Sadayappan, P.: Integrated data and task management for scientific applications. In: Bubak, M., van Albada, G.D., Dongarra, J., Sloot, P.M.A. (eds.) ICCS 2008, Part I. LNCS, vol. 5101, pp. 20–31. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  9. Nieplocha, J., Palmer, B., Tipparaju, V., Krishnan, M., Trease, H., Aprà, E.: Advances, applications and performance of the global arrays shared memory programming toolkit. Int. J. High Perform. Comput. Appl. 20(2), 203–231 (2006)

    Article  Google Scholar 

  10. Schenter, G.K., Kathmann, S.M., Garrett, B.C.: Dynamical nucleation theory: A new molecular approach to vapor-liquid nucleation. Physical Review Letters 82(17), 3484 (1999)

    Article  Google Scholar 

  11. Windus, T.L., Kathmann, S.M., Crosby, L.D.: High performance computations using dynamical nucleation theory. Journal of Physics: Conference Series 125(1), 12017 (2008)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Dinan, J. et al. (2011). Noncollective Communicator Creation in MPI. In: Cotronis, Y., Danalis, A., Nikolopoulos, D.S., Dongarra, J. (eds) Recent Advances in the Message Passing Interface. EuroMPI 2011. Lecture Notes in Computer Science, vol 6960. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-24449-0_32

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-24449-0_32

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-24448-3

  • Online ISBN: 978-3-642-24449-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics