Skip to main content

A Blocking Strategy on Multicore Architectures for Dynamically Adaptive PDE Solvers

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 6067))

Abstract

This paper analyses a PDE solver working on adaptive Cartesian grids. While a rigorous element-wise formulation of this solver offers great flexibility concerning dynamic adaptivity, and while it comes along with very low memory requirements, the realisation’s speed can not cope with codes working on patches of regular grids—in particular, if the latter deploy patches to several cores. Instead of composing a grid of regular patches, we suggest to identify regular patches throughout the recursive, element-wise grid traversal. Our code then unrolls the recursion for these regular grid blocks automatically, and it deploys their computations to several cores. It hence benefits from multicores on regular subdomains, but preserves its simple, element-wise character and its ability to handle arbitrary dynamic refinement and domain topology changes.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Bergen, B., Wellein, G., Hülsemann, F., Rüde, U.: Hierarchical hybrid grids: achieving TERAFLOP performance on large scale finite element simulations. International Journal of Parallel, Emergent and Distributed Systems 4(22), 311–329 (2007)

    Article  Google Scholar 

  2. Brenk, M., Bungartz, H.-J., Mehl, M., Muntean, I.L., Neckel, T., Weinzierl, T.: Numerical Simulation of Particle Transport in a Drift Ratchet. SIAM Journal of Scientific Computing 30(6), 2777–2798 (2008)

    Article  MATH  MathSciNet  Google Scholar 

  3. de St. Germain, J.D., McCorquodale, J., Parker, S.G., Johnson, C.R.: Uintah: a massively parallel problem solving environment. In: The Ninth International Symposium on High-Performance Distributed Computing, pp. 33–41 (2000)

    Google Scholar 

  4. Gropp, W.D., Kaushik, D.K., Keyes, D.E., Smith, B.F.: High-performacne parallel implicit CFD. Parallel Computing 27(4), 337–362 (2001)

    Article  MATH  Google Scholar 

  5. Günther, F., Mehl, M., Pögl, M., Zenger, C.: A cache-aware algorithm for PDEs on hierarchical data structures based on space-filling curves. SIAM Journal on Scientific Computing 28(5), 1634–1650 (2006)

    Article  MATH  MathSciNet  Google Scholar 

  6. Knuth, D.E.: The genesis of attribute grammars. In: WAGA: Proceedings of the International Conference on Attribute Grammars and Their Applications, pp. 1–12 (1998)

    Google Scholar 

  7. Kowarschik, M., Weiß, C.: An Overview of Cache Optimization Techniques and Cache-Aware Numerical Algorithms. In: Algorithms for Memory Hierarchies 2002, pp. 213–232 (2003)

    Google Scholar 

  8. Rugina, R., Rinard, M.C.: Recursion Unrolling for Divide and Conquer Programs. In: Midkiff, S.P., Moreira, J.E., Gupta, M., Chatterjee, S., Ferrante, J., Prins, J.F., Pugh, B., Tseng, C.-W. (eds.) LCPC 2000. LNCS, vol. 2017, pp. 34–48. Springer, Heidelberg (2001)

    Chapter  Google Scholar 

  9. Sutter, H.: The Free Lunch Is Over: A Fundamental Turn Toward Concurrency in Software. Dr. Dobb’s Journal 3(30), 202–210 (2005)

    Google Scholar 

  10. Weinzierl, T.: A Framework for Parallel PDE Solvers on Multiscale Adaptive Cartesian Grids. Verlag Dr. Hut (2009)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Eckhardt, W., Weinzierl, T. (2010). A Blocking Strategy on Multicore Architectures for Dynamically Adaptive PDE Solvers. In: Wyrzykowski, R., Dongarra, J., Karczewski, K., Wasniewski, J. (eds) Parallel Processing and Applied Mathematics. PPAM 2009. Lecture Notes in Computer Science, vol 6067. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-14390-8_59

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-14390-8_59

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-14389-2

  • Online ISBN: 978-3-642-14390-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics