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Abstract

Extracting useful information from a very large amount of biomedical texts is an important and difficult activity in biomedicine field. Data to be examined are generally unstructured and the available computational resources do not still provide adequate mechanisms for retrieving and analyse very large amount of contents. In this paper we present a rule-based system for Text Mining process applied in biomedical textual documents. This application requires a strongly use of the computational resource to perform intensive operations. We propose a grid computing approach to improve application performance.

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References

  1. Polajnar, T.: Survey of Text Mining of Biomedical Corpora (2006)

    Google Scholar 

  2. Tan, A.H.: Text Mining: The State of the Art and the Challenges. In: Zhong, N., Zhou, L. (eds.) PAKDD 1999. LNCS (LNAI), vol. 1574, Springer, Heidelberg (1999)

    Google Scholar 

  3. Prather, J.C., Lobach, D.F., Goodwin, L.C., Hales, J.W.: Medical data mining: knowledge discovery in a clinical data warehouse. In: Proc AMIA Annu Fall Symp, Division of Medical Informatics, Duke University Medical Center, Durham, North Carolina, USA, pp. 101–105 (1997)

    Google Scholar 

  4. Cohen, A.M., Hersh, W.R.: A Survey of Current Work in Biomedical Text Mining. Briefing in Bioinformatics 6 (2005)

    Google Scholar 

  5. Polanski, A., Kimmel, M.: Bioinformatics. Springer, Heidelberg (2007)

    MATH  Google Scholar 

  6. Hersh, W.: Evaluation of biomedical text-mining systems. Briefings in Bioinformatics 6(4), 344–356 (2005)

    Article  Google Scholar 

  7. Manning, C.D., Schutze, H.: Foundations of Statistical Natural Language Processing. MIT Press, Cambridge (1999)

    MATH  Google Scholar 

  8. Ahonen, H.: Finding All Maximal Frequent Sequences in Text. In: ICML 1999 Workshop on Machine Learning in Text Data Analysis, Bled, Slovenia (1999)

    Google Scholar 

  9. Hotho, A., Numberger, A., Paab, G.: A Brief Survey of Text Mining. LDV Forum-GLDV Journal for Computational Linguistics and Language Technology 20(1), 19–62 (2005)

    Google Scholar 

  10. Mobasher, B., Cooley, R., Srivastava, J.: Creating Adaptive Web Sites Through Usage-Based Clustering of URLs (1999). In: Proc. of the 1999 IEEE Knowledge and Data Engineering Exchange Workshop (KDEX 1999) (1999)

    Google Scholar 

  11. Foster, I., Kesselmann, C.: The Grid: Blueprint for a New Computing Infrastructure. Morgan-Kaufmann edition (1998)

    Google Scholar 

  12. Castellano, M., Aprile, A., Mastronardi, G., Piscitelli, G., Dicensi, V., Giuseppe, D.G.: Simulating a Computational Grid. GESTS, International Transaction on Communication and Signal Processing (2007)

    Google Scholar 

  13. Cunningham, H., Maynard, D., Bontcheva, K., Tablan, V.: GATE: A Framework and Graphical Development Environment for Robust NLP Tools and Applications. In: Proceedings of the 40th Anniversary Meeting of the Association for Computational Linguistics (ACL 2002), Philadelphia (2002)

    Google Scholar 

  14. The Globus Alliance: Globus Toolkit 4, http://www.globus.org/toolkit

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De-Shuang Huang Donald C. Wunsch II Daniel S. Levine Kang-Hyun Jo

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© 2008 Springer-Verlag Berlin Heidelberg

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Castellano, M. et al. (2008). Biomedical Text Mining Using a Grid Computing Approach. In: Huang, DS., Wunsch, D.C., Levine, D.S., Jo, KH. (eds) Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence. ICIC 2008. Lecture Notes in Computer Science(), vol 5227. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-85984-0_129

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  • DOI: https://doi.org/10.1007/978-3-540-85984-0_129

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-85983-3

  • Online ISBN: 978-3-540-85984-0

  • eBook Packages: Computer ScienceComputer Science (R0)

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